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    CNTN1 contactin 1 [ Coturnix japonica (Japanese quail) ]

    Gene ID: 107309601, updated on 14-Mar-2024

    Summary

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    Gene symbol
    CNTN1
    Gene description
    contactin 1
    See related
    Ensembl:ENSCJPG00005013390
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Coturnix japonica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Perdicinae; Coturnix
    Orthologs
    human mouse all
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    Genomic context

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    See CNTN1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    101 current Coturnix japonica 2.1 (GCF_001577835.2) 1 NC_029516.1 (25969291..26195342)

    Chromosome 1 - NC_029516.1Genomic Context describing neighboring genes Neighboring gene patatin like phospholipase domain containing 8 Neighboring gene neuronal cell adhesion molecule Neighboring gene PDZ domain containing ring finger 4 Neighboring gene PDZ domain-containing RING finger protein 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029516.1 Chromosome 1 Reference Coturnix japonica 2.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Coturnix japonica Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coturnix japonica 2.1 Primary Assembly

    Genomic

    1. NC_029516.1 Reference Coturnix japonica 2.1 Primary Assembly

      Range
      25969291..26195342
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032443168.1 → XP_032299059.1  contactin-1

      UniProtKB/TrEMBL
      A0A8C2TQF9, A0A8C2YCH4
      Related
      ENSCJPP00005016270.1, ENSCJPT00005022897.1
      Conserved Domains (8) summary
      cd05851
      Location:232 → 319
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:601 → 692
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:803 → 884
      fn3; Fibronectin type III domain
      cd00096
      Location:34 → 38
      Ig; Ig strand A [structural motif]
      cd04970
      Location:494 → 592
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:134 → 222
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:404 → 492
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:32 → 126
      Ig; Immunoglobulin domain

    2. XM_015854536.2 → XP_015710022.1  contactin-1

      UniProtKB/TrEMBL
      A0A8C2TQF9, A0A8C2YCH4
      Related
      ENSCJPP00005016271.1, ENSCJPT00005022898.1
      Conserved Domains (8) summary
      cd05851
      Location:232 → 319
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:601 → 692
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:803 → 884
      fn3; Fibronectin type III domain
      cd00096
      Location:34 → 38
      Ig; Ig strand A [structural motif]
      cd04970
      Location:494 → 592
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:134 → 222
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:404 → 492
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:32 → 126
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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