gal10 UDP-glucose 4-epimerase/aldose 1-epimerase Gal10 [Schizosaccharomyces pombe (fission yeast)] - Gene

Summary

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Gene symbol: gal10
Gene description: UDP-glucose 4-epimerase/aldose 1-epimerase Gal10
Primary source: PomBase:SPBPB2B2.12c
Locus tag: SPBPB2B2.12c
See related: FungiDB:SPBPB2B2.12c; VEuPathDB:SPBPB2B2.12c
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Schizosaccharomyces pombe (strain: 972h-)
Lineage: Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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Genomic context

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See gal10 in Genome Data Viewer

Location:: chromosome: II

Exon count:: 1

Sequence:: Chromosome: II; NC_003423.3 (4484023..4487569, complement)

Chromosome II - NC_003423.3 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003423.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Sch. pombe has two types of UDP-glucose/-galactose 4-epimerase, uge1 and gal10.
Title: Characterization of two different types of UDP-glucose/-galactose 4-epimerase involved in galactosylation in fission yeast.

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Pathways from PubChem

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by PomBase

Function	Evidence Code	Pubs
enables UDP-glucose 4-epimerase activity	IBA Inferred from Biological aspect of Ancestor more info
enables UDP-glucose 4-epimerase activity	IMP Inferred from Mutant Phenotype more info	PubMed
enables aldose 1-epimerase activity	ISO Inferred from Sequence Orthology more info
enables carbohydrate binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in UDP-galactose biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in galactose metabolic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
is_active_in cytosol	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: UDP-glucose 4-epimerase/aldose 1-epimerase Gal10

NP_596858.1

EC 5.1.3.2

EC 5.1.3.3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003423.3 Reference assembly

Range

4484023..4487569 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001023881.2 → NP_596858.1 UDP-glucose 4-epimerase/aldose 1-epimerase Gal10 [Schizosaccharomyces pombe]

See identical proteins and their annotated locations for NP_596858.1

Status: PROVISIONAL

UniProtKB/Swiss-Prot

Q9HDU3

Conserved Domains (3) summary

cd09019
Location:376 → 689

galactose_mutarotase_like; galactose mutarotase_like

cd05247
Location:8 → 340

UDP_G4E_1_SDR_e; UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

TIGR01179
Location:8 → 344

galE; UDP-glucose-4-epimerase GalE