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    CNTN1 contactin 1 [ Lagopus leucura (white-tailed ptarmigan) ]

    Gene ID: 122180672, updated on 22-Mar-2024

    Summary

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    Gene symbol
    CNTN1
    Gene description
    contactin 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lagopus leucura
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus
    Orthologs
    human mouse all
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    Genomic context

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    See CNTN1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    100 current USGS_WTPT01 (GCF_019238085.1) Unplaced Scaffold NW_024962265.1 (27447982..27612019)

    NW_024962265.1Genomic Context describing neighboring genes Neighboring gene neuronal cell adhesion molecule-like Neighboring gene neuronal cell adhesion molecule Neighboring gene PDZ domain containing ring finger 4 Neighboring gene glucoside xylosyltransferase 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_024962265 Unplaced Scaffold Reference USGS_WTPT01

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cell-cell adhesion mediator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    contactin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lagopus leucura Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference USGS_WTPT01

    Genomic

    1. NW_024962265.1 Reference USGS_WTPT01

      Range
      27447982..27612019
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_042872500.1 → XP_042728434.1  contactin-1

      Conserved Domains (6) summary
      cd05851
      Location:232 → 319
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      smart00409
      Location:413 → 487
      IG; Immunoglobulin
      smart00410
      Location:51 → 123
      IG_like; Immunoglobulin like
      cd00063
      Location:803 → 891
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd00096
      Location:339 → 343
      Ig; Ig strand B [structural motif]
      cl11960
      Location:323 → 399
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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