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    CPDV_gp1 polyprotein [ Canine picornavirus ]

    Gene ID: 11933339, updated on 18-Aug-2023

    Summary

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    Gene symbol
    CPDV_gp1
    Gene description
    polyprotein
    Locus tag
    CPDV_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canine picornavirus (strain: 325F, isolate: 325, nat-host: Canis familiaris)
    Lineage
    Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Mischivirus; Mischivirus D
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    Genomic context

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    Sequence:
    NC_016964.1 (669..7805)

    NC_016964.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_016964.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complete genome sequence of a novel picornavirus, canine picornavirus, discovered in dogs. Woo PC, et al. J Virol, 2012 Mar. PMID 22354943, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    L
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_016964.1 Reference assembly

      Range
      669..7805
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_005351240.1 polyprotein [Canine picornavirus]

      See identical proteins and their annotated locations for YP_005351240.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8A6C912, H6VLP2
      Conserved Domains (6) summary
      cd00205
      Location:406 → 581
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00073
      Location:138 → 319
      Rhv; picornavirus capsid protein
      pfam00548
      Location:1735 → 1899
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1400 → 1499
      RNA_helicase; RNA helicase
      pfam08727
      Location:1623 → 1671
      P3A; Poliovirus 3A protein like
      cl02808
      Location:1930 → 2376
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_005352644.1 L

    3. YP_005352645.1 VP4

      Conserved Domains (1) summary
      pfam02226
      Location:1 → 65
      Pico_P1A; Picornavirus coat protein (VP4)

    4. YP_005352646.1 VP2

      Conserved Domains (1) summary
      pfam00073
      Location:24 → 205
      Rhv; picornavirus capsid protein

    5. YP_005352647.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:61 → 224
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_005352648.1 VP1

      Conserved Domains (1) summary
      cd00205
      Location:78 → 278
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    7. YP_005352649.1 2A

    8. YP_005352650.1 2B

    9. YP_005352651.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:128 → 227
      RNA_helicase; RNA helicase

    10. YP_005352652.1 3A

      Conserved Domains (1) summary
      pfam08727
      Location:20 → 68
      P3A; Poliovirus 3A protein like

    11. YP_005352653.1 3B

    12. YP_005352654.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:1 → 165
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    13. YP_005352655.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:13 → 459
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

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