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    SP110 SP110 nuclear body protein [ Sus scrofa (pig) ]

    Gene ID: 100519278, updated on 8-Mar-2024

    Summary

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    Official Symbol
    SP110provided by VGNC
    Official Full Name
    SP110 nuclear body proteinprovided by VGNC
    Primary source
    VGNC:VGNC:96367
    See related
    Ensembl:ENSSSCG00000016261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 20.8), lung (RPKM 12.1) and 8 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (131169911..131226543, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (144854882..144909261, complement)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106508137 Neighboring gene probable G-protein coupled receptor 148 Neighboring gene glucosamine 6-phosphate N-acetyltransferase pseudogene Neighboring gene uncharacterized LOC110257073 Neighboring gene SP140 nuclear body protein Neighboring gene nuclear body protein SP140-like protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization of Sp110 gene in pigs. Li LZ, et al. Mol Genet Genomics, 2016 Jun. PMID 26995495
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sp110 nuclear body protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      131169911..131226543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021075650.1 → XP_020931309.1  sp110 nuclear body protein isoform X5

      UniProtKB/TrEMBL
      A0A8D0IM18
      Conserved Domains (5) summary
      pfam01342
      Location:378 → 453
      SAND; SAND domain
      pfam03172
      Location:5 → 103
      HSR; HSR domain
      cl02556
      Location:535 → 636
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:470 → 511
      PHD_SF; PHD finger superfamily
      cl26464
      Location:120 → 342
      Atrophin-1; Atrophin-1 family

    2. XM_021075651.1 → XP_020931310.1  sp110 nuclear body protein isoform X6

      UniProtKB/TrEMBL
      A0A8D0IM18
      Related
      ENSSSCP00000053159.3, ENSSSCT00000038109.3
      Conserved Domains (5) summary
      pfam01342
      Location:378 → 453
      SAND; SAND domain
      pfam03172
      Location:5 → 103
      HSR; HSR domain
      cl02556
      Location:535 → 633
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:470 → 511
      PHD_SF; PHD finger superfamily
      cl26464
      Location:120 → 342
      Atrophin-1; Atrophin-1 family

    3. XM_021075649.1 → XP_020931308.1  sp110 nuclear body protein isoform X4

      UniProtKB/TrEMBL
      A0A287ANT5, I6XGI2
      Related
      ENSSSCP00000045556.3, ENSSSCT00000063867.3
      Conserved Domains (5) summary
      pfam01342
      Location:366 → 441
      SAND; SAND domain
      pfam03172
      Location:15 → 113
      HSR; HSR domain
      cl02556
      Location:523 → 621
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:458 → 499
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130 → 363
      Atrophin-1; Atrophin-1 family

    4. XM_021075648.1 → XP_020931307.1  sp110 nuclear body protein isoform X3

      UniProtKB/TrEMBL
      I6XGI2
      Conserved Domains (5) summary
      pfam01342
      Location:366 → 441
      SAND; SAND domain
      pfam03172
      Location:15 → 113
      HSR; HSR domain
      cl02556
      Location:523 → 624
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:458 → 499
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130 → 363
      Atrophin-1; Atrophin-1 family

    5. XM_021075647.1 → XP_020931306.1  sp110 nuclear body protein isoform X2

      UniProtKB/TrEMBL
      W6E9Y6
      Conserved Domains (5) summary
      pfam01342
      Location:388 → 463
      SAND; SAND domain
      pfam03172
      Location:15 → 113
      HSR; HSR domain
      cl02556
      Location:545 → 643
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:480 → 521
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130 → 352
      Atrophin-1; Atrophin-1 family

    6. XM_021075646.1 → XP_020931305.1  sp110 nuclear body protein isoform X1

      UniProtKB/TrEMBL
      A0A287BJT6, W6E9Y6
      Related
      ENSSSCP00000056418.2, ENSSSCT00000041167.2
      Conserved Domains (5) summary
      pfam01342
      Location:388 → 463
      SAND; SAND domain
      pfam03172
      Location:15 → 113
      HSR; HSR domain
      cl02556
      Location:545 → 646
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:480 → 521
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130 → 352
      Atrophin-1; Atrophin-1 family

    7. XM_021075655.1 → XP_020931314.1  sp110 nuclear body protein isoform X10

      UniProtKB/TrEMBL
      A0A287A1X3, A0A8D0QIV0
      Conserved Domains (5) summary
      pfam01342
      Location:277 → 352
      SAND; SAND domain
      pfam03172
      Location:1 → 24
      HSR; HSR domain
      cl02556
      Location:434 → 532
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:369 → 410
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41 → 274
      Atrophin-1; Atrophin-1 family

    8. XM_021075654.1 → XP_020931313.1  sp110 nuclear body protein isoform X9

      UniProtKB/TrEMBL
      A0A287A1X3, A0A8D0QIV0
      Conserved Domains (5) summary
      pfam01342
      Location:277 → 352
      SAND; SAND domain
      pfam03172
      Location:1 → 24
      HSR; HSR domain
      cl02556
      Location:434 → 535
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:369 → 410
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41 → 274
      Atrophin-1; Atrophin-1 family

    9. XM_021075653.1 → XP_020931312.1  sp110 nuclear body protein isoform X8

      UniProtKB/TrEMBL
      A0A8D0IM18
      Conserved Domains (5) summary
      pfam01342
      Location:299 → 374
      SAND; SAND domain
      pfam03172
      Location:1 → 24
      HSR; HSR domain
      cl02556
      Location:456 → 554
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:391 → 432
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41 → 263
      Atrophin-1; Atrophin-1 family

    10. XM_021075652.1 → XP_020931311.1  sp110 nuclear body protein isoform X7

      UniProtKB/TrEMBL
      A0A8D0IM18
      Conserved Domains (5) summary
      pfam01342
      Location:299 → 374
      SAND; SAND domain
      pfam03172
      Location:1 → 24
      HSR; HSR domain
      cl02556
      Location:456 → 557
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:391 → 432
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41 → 263
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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