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    LOC100208703 uncharacterized LOC100208703 [ Hydra vulgaris (swiftwater hydra) ]

    Gene ID: 100208703, updated on 7-Sep-2022

    Summary

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    Gene symbol
    LOC100208703
    Gene description
    uncharacterized LOC100208703
    See related
    EnsemblRapid:LOC100208703
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Hydra vulgaris
    Lineage
    Eukaryota; Metazoa; Cnidaria; Hydrozoa; Hydroidolina; Anthoathecata; Aplanulata; Hydridae; Hydra
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    Genomic context

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    See LOC100208703 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Hydra_105_v3 (GCF_022113875.1) 7 NC_061162.1 (6078780..6079918, complement)
    102 previous assembly Hydra_RP_1.0 (GCF_000004095.1) Unplaced Scaffold NW_004167008.1 (70030..71122)

    Chromosome 7 - NC_061162.1Genomic Context describing neighboring genes Neighboring gene cyclic nucleotide-binding domain-containing protein 2 Neighboring gene dnaJ homolog subfamily C member 22 Neighboring gene uncharacterized LOC124813238 Neighboring gene muscarinic acetylcholine receptor M3 Neighboring gene uncharacterized LOC124813239

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of complex structures: minicollagens shape the cnidarian nematocyst. David CN, et al. Trends Genet, 2008 Sep. PMID 18676050
    2. Mini-collagens in hydra nematocytes. Kurz EM, et al. J Cell Biol, 1991 Nov. PMID 1955459, Free PMC Article
    3. RNAseq versus genome-predicted transcriptomes: a large population of novel transcripts identified in an Illumina-454 Hydra transcriptome. Wenger Y, et al. BMC Genomics, 2013 Mar 25. PMID 23530871, Free PMC Article
    4. Punctuated emergences of genetic and phenotypic innovations in eumetazoan, bilaterian, euteleostome, and hominidae ancestors. Wenger Y, et al. Genome Biol Evol, 2013. PMID 24065732, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    uncharacterized LOC100208703
    Names
    minicollagen 12

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280869.1 → NP_001267798.1  uncharacterized LOC100208703 precursor

      See identical proteins and their annotated locations for NP_001267798.1

      Status: PROVISIONAL

      Source sequence(s)
      BK008446
      UniProtKB/TrEMBL
      G7H7W5
      Related
      NP_001267798.1, NM_001280869.1

    RefSeqs of Annotated Genomes: Hydra vulgaris Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Hydra_105_v3 Primary Assembly

    Genomic

    1. NC_061162.1 Reference Hydra_105_v3 Primary Assembly

      Range
      6078780..6079918 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012706854.2 → XP_012562308.1  uncharacterized LOC100208703 isoform X1

      UniProtKB/TrEMBL
      A0A8B7DXK5
      Related
      XP_012562308.1, XM_012706854.2
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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