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    CHD2 chromodomain helicase DNA binding protein 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 479028, updated on 23-Dec-2021

    Summary

    Official Symbol
    CHD2provided by VGNC
    Official Full Name
    chromodomain helicase DNA binding protein 2provided by VGNC
    Primary source
    VGNC:VGNC:39200
    See related
    Ensembl:ENSCAFG00845002446
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    NEW
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    Genomic context

    See CHD2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    40
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (47511193..47631121, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (49802181..49921599, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (47591992..47711357, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (47029130..47148452, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (47260475..47380113, complement)
    105 previous assembly CanFam3.1 (GCF_000002285.3) 3 NC_006585.3 (47101789..47221473, complement)

    Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111095208 Neighboring gene uncharacterized LOC119871199 Neighboring gene repulsive guidance molecule BMP co-receptor a Neighboring gene 60 kDa heat shock protein, mitochondrial-like Neighboring gene histidine triad nucleotide-binding protein 1-like

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    chromodomain-helicase-DNA-binding protein 2
    XP_005618379.1
    XP_005618381.1
    XP_005618382.1
    XP_005618383.1
    XP_022272609.1
    XP_038327750.1
    XP_038327751.1
    XP_038327752.1
    XP_038327753.1
    XP_038327754.1
    XP_038327755.1
    XP_038327756.1
    XP_038330322.1
    XP_038388671.1
    XP_038388672.1
    XP_038388673.1
    XP_038388674.1
    XP_038388675.1
    XP_038388676.1
    XP_038388677.1
    XP_038452986.1
    XP_038452987.1
    XP_038452988.1
    XP_038452989.1
    XP_038452990.1
    XP_038452991.1
    XP_038452992.1
    XP_038517172.1
    XP_038517173.1
    XP_038517174.1
    XP_038517175.1
    XP_038517176.1
    XP_038517177.1
    XP_038517178.1
    XP_536179.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051807.1 Reference ROS_Cfam_1.0

      Range
      47511193..47631121 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038661249.1XP_038517177.1  chromodomain-helicase-DNA-binding protein 2 isoform X6

      Conserved Domains (6) summary
      PLN03142
      Location:4811034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14841566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11431231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    2. XM_038661246.1XP_038517174.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

      Conserved Domains (6) summary
      PLN03142
      Location:445998
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:353424
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:236320
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:441677
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14481530
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11071195
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    3. XM_038661248.1XP_038517176.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      Related
      ENSCAFP00845003732.1, ENSCAFT00845004673.1
      Conserved Domains (6) summary
      PLN03142
      Location:481984
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14341516
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:10931181
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    4. XM_038661247.1XP_038517175.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

      Related
      ENSCAFP00845003779.1, ENSCAFT00845004728.1
      Conserved Domains (6) summary
      PLN03142
      Location:4811034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14371519
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11431231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    5. XM_038661244.1XP_038517172.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      Conserved Domains (6) summary
      PLN03142
      Location:4811034
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14841566
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11431231
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    6. XM_038661245.1XP_038517173.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      Related
      ENSCAFP00845003541.1, ENSCAFT00845004427.1
      Conserved Domains (6) summary
      PLN03142
      Location:4681021
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:376447
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:259343
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:464700
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14711553
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11301218
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    7. XM_038661250.1XP_038517178.1  chromodomain-helicase-DNA-binding protein 2 isoform X7

      Conserved Domains (3) summary
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cl28899
      Location:477514
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049263.1 Alternate UMICH_Zoey_3.1

      Range
      47029130..47148452 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038471827.1XP_038327755.1  chromodomain-helicase-DNA-binding protein 2 isoform X6

    2. XM_038471824.1XP_038327752.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

    3. XM_038471826.1XP_038327754.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      Conserved Domains (6) summary
      PLN03142
      Location:481984
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14341516
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:10931181
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    4. XM_038471825.1XP_038327753.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

    5. XM_038471822.1XP_038327750.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    6. XM_038471823.1XP_038327751.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      Conserved Domains (6) summary
      PLN03142
      Location:4681021
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:376447
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:259343
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:464700
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14711553
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11301218
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    7. XM_038471828.1XP_038327756.1  chromodomain-helicase-DNA-binding protein 2 isoform X7

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

      Range
      47260475..47380113 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038597063.1XP_038452991.1  chromodomain-helicase-DNA-binding protein 2 isoform X6

    2. XM_038597060.1XP_038452988.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

    3. XM_038597062.1XP_038452990.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      Conserved Domains (6) summary
      PLN03142
      Location:481984
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14341516
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:10931181
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    4. XM_038597061.1XP_038452989.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

    5. XM_038597058.1XP_038452986.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    6. XM_038597059.1XP_038452987.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      Conserved Domains (6) summary
      PLN03142
      Location:4681021
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:376447
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:259343
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:464700
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14711553
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11301218
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    7. XM_038597064.1XP_038452992.1  chromodomain-helicase-DNA-binding protein 2 isoform X7

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

      Range
      47591992..47711357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038532748.1XP_038388676.1  chromodomain-helicase-DNA-binding protein 2 isoform X6

    2. XM_038532745.1XP_038388673.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

    3. XM_038532747.1XP_038388675.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      Conserved Domains (6) summary
      PLN03142
      Location:481984
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14341516
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:10931181
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    4. XM_038532746.1XP_038388674.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

    5. XM_038532743.1XP_038388671.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

    6. XM_038532744.1XP_038388672.1  chromodomain-helicase-DNA-binding protein 2 isoform X2

      Conserved Domains (6) summary
      PLN03142
      Location:4681021
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:376447
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:259343
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:464700
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14711553
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11301218
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    7. XM_038532749.1XP_038388677.1  chromodomain-helicase-DNA-binding protein 2 isoform X7

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      49802181..49921599 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005618325.4XP_005618382.1  chromodomain-helicase-DNA-binding protein 2 isoform X6

      Conserved Domains (4) summary
      cd00024
      Location:295357
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:391460
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam13907
      Location:14841566
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:4811034
      SNF2_N; SNF2 family N-terminal domain
    2. XM_022416901.2XP_022272609.1  chromodomain-helicase-DNA-binding protein 2 isoform X3

      Conserved Domains (4) summary
      cd00024
      Location:259321
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:355424
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam13907
      Location:14481530
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:445998
      SNF2_N; SNF2 family N-terminal domain
    3. XM_038474394.1XP_038330322.1  chromodomain-helicase-DNA-binding protein 2 isoform X5

      Conserved Domains (6) summary
      PLN03142
      Location:481984
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:389460
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:272356
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:477713
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14341516
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:10931181
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    4. XM_005618324.4XP_005618381.1  chromodomain-helicase-DNA-binding protein 2 isoform X4

      Conserved Domains (4) summary
      cd00024
      Location:295357
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:391460
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam13907
      Location:14371519
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:4811034
      SNF2_N; SNF2 family N-terminal domain
    5. XM_005618322.4XP_005618379.1  chromodomain-helicase-DNA-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      J9PA90
      Conserved Domains (4) summary
      cd00024
      Location:295357
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:391460
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
      pfam13907
      Location:14841566
      DUF4208; Domain of unknown function (DUF4208)
      cl26465
      Location:4811034
      SNF2_N; SNF2 family N-terminal domain
    6. XM_536179.7XP_536179.2  chromodomain-helicase-DNA-binding protein 2 isoform X2

      Conserved Domains (6) summary
      PLN03142
      Location:4681021
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd18661
      Location:376447
      CD2_tandem_CHD1-2_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18666
      Location:259343
      CD1_tandem_CHD1-2_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 1 and 2, and similar proteins
      cd18054
      Location:464700
      DEXHc_CHD2; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 2
      pfam13907
      Location:14711553
      DUF4208; Domain of unknown function (DUF4208)
      pfam18375
      Location:11301218
      CDH1_2_SANT_HL1; CDH1/2 SANT-Helical linker 1
    7. XM_005618326.4XP_005618383.1  chromodomain-helicase-DNA-binding protein 2 isoform X7

      Conserved Domains (2) summary
      cd00024
      Location:295357
      CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
      pfam00385
      Location:391460
      Chromo; Chromo (CHRromatin Organisation MOdifier) domain
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