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    lmo3 LIM domain only 3 [ Danio rerio (zebrafish) ]

    Gene ID: 553774, updated on 16-Oct-2021

    Summary

    Official Symbol
    lmo3provided by ZNC
    Official Full Name
    LIM domain only 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-201
    See related
    Ensembl:ENSDARG00000008720
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    LMO-3; lmo3b; zgc:110149
    Orthologs
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    Genomic context

    See lmo3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (12612465..12679290)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (12613621..12680441)
    103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (11676869..11743814)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor (GEF) 39 Neighboring gene uncharacterized LOC103910417 Neighboring gene microsomal glutathione S-transferase 1.1 Neighboring gene microsomal glutathione S-transferase 1.2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Homology

    Clone Names

    • MGC110149

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020739.2NP_001018575.1  LIM domain only protein 3 isoform 2

      See identical proteins and their annotated locations for NP_001018575.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AL954848
      UniProtKB/Swiss-Prot
      Q503U0
      Related
      ENSDARP00000015268.6, ENSDART00000003583.8
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cl02475
      Location:77131
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    2. NM_001328595.1NP_001315524.1  LIM domain only protein 3 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL954848, EH435155
      UniProtKB/TrEMBL
      B0R1F5
      Related
      ENSDARP00000098627.2, ENSDART00000112860.3
      Conserved Domains (2) summary
      cd09388
      Location:3589
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:99153
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      12612465..12679290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164631.4XP_005164688.1  LIM domain only protein 3 isoform X1

      See identical proteins and their annotated locations for XP_005164688.1

      UniProtKB/TrEMBL
      A0A0R4IKA1
      Conserved Domains (2) summary
      cd09388
      Location:2579
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:89143
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    2. XM_005164633.4XP_005164690.1  LIM domain only protein 3 isoform X3

      See identical proteins and their annotated locations for XP_005164690.1

      UniProtKB/Swiss-Prot
      Q503U0
      Related
      ENSDARP00000152478.1, ENSDART00000181201.1
      Conserved Domains (2) summary
      cd09388
      Location:1367
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cl02475
      Location:77131
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers
    3. XM_021475015.1XP_021330690.1  LIM domain only protein 3 isoform X2

      Conserved Domains (2) summary
      cd09388
      Location:2478
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:88142
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    4. XM_005164630.4XP_005164687.1  LIM domain only protein 3 isoform X1

      See identical proteins and their annotated locations for XP_005164687.1

      UniProtKB/TrEMBL
      A0A0R4IKA1
      Conserved Domains (2) summary
      cd09388
      Location:2579
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:89143
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
    5. XM_005164629.3XP_005164686.1  LIM domain only protein 3 isoform X1

      See identical proteins and their annotated locations for XP_005164686.1

      UniProtKB/TrEMBL
      A0A0R4IKA1
      Conserved Domains (2) summary
      cd09388
      Location:2579
      LIM1_LMO1_LMO3; The first LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)
      cd09389
      Location:89143
      LIM2_LMO1_LMO3; The second LIM domain of LMO1 and LMO3 (LIM domain only protein 1 and 3)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394553.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      247165..310386
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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