U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Tc00.1047053503959.50 hypothetical protein [ Trypanosoma cruzi ]

    Gene ID: 3539416, updated on 23-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    Tc00.1047053503959.50
    Gene description
    hypothetical protein
    Locus tag
    Tc00.1047053503959.50
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Trypanosoma cruzi (strain: CL Brener)
    Lineage
    Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tc00.1047053503959.50 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    1

    NW_001849397.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_001849397.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
    2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Miscellaneous features

    • Loc: 92699-92780 T-rich

    Repeated regions

    • Loc: 92666-92686 rpt_type = tandem , rpt_unit_seq = ta , satellite = microsatellite

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pseudouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in tRNA pseudouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    hypothetical protein
    XP_808888.1
    • heterozygous, Esmeraldo-like haplotype
      allele of Tc00.1047053506195.270

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_001849397.1 Reference assembly

      Range
      92631..94535
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_803795.1 → XP_808888.1  hypothetical protein, conserved [Trypanosoma cruzi]

      See identical proteins and their annotated locations for XP_808888.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7J6Y6H3, Q4D3D3
      Conserved Domains (2) summary
      cd02568
      Location:104 → 560
      PseudoU_synth_PUS1_PUS2; Pseudouridine synthase, PUS1/ PUS2 like
      COG0101
      Location:100 → 564
      TruA; tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials