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    PDXDC1 pyridoxal dependent decarboxylase domain containing 1 [ Bos taurus (cattle) ]

    Gene ID: 505868, updated on 26-Jun-2021

    Summary

    Gene symbol
    PDXDC1
    Gene description
    pyridoxal dependent decarboxylase domain containing 1
    See related
    Ensembl:ENSBTAG00000004801
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
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    Genomic context

    See PDXDC1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 25 NC_037352.1 (13731837..13786753, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 25 AC_000182.1 (13824152..13879284, complement)

    Chromosome 25 - NC_037352.1Genomic Context describing neighboring genes Neighboring gene RRN3 homolog, RNA polymerase I transcription factor Neighboring gene microRNA mir-562 Neighboring gene N-terminal asparagine amidase Neighboring gene MPV17 mitochondrial inner membrane protein like Neighboring gene bMERB domain containing 1 Neighboring gene uncharacterized LOC112444305

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC179380

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables carboxy-lyase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in carboxylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    pyridoxal-dependent decarboxylase domain-containing protein 1
    NP_001095329.1
    XP_010817588.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101859.2NP_001095329.1  pyridoxal-dependent decarboxylase domain-containing protein 1

      See identical proteins and their annotated locations for NP_001095329.1

      Status: PROVISIONAL

      Source sequence(s)
      BC151480
      UniProtKB/Swiss-Prot
      A7MBC2
      Related
      ENSBTAP00000043763.2, ENSBTAT00000046463.3
      Conserved Domains (1) summary
      cl18945
      Location:204395
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037352.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      13731837..13786753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_010819286.3XP_010817588.1  pyridoxal-dependent decarboxylase domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      cl18945
      Location:177368
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...
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