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    Abd-A abdominal-A [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 641595, updated on 15-Apr-2024

    Summary

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    Gene symbol
    Abd-A
    Gene description
    abdominal-A
    Locus tag
    TcasGA2_TC000894
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (7193573..7226940, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (7911705..8033828)

    Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene ultrabithorax Neighboring gene uncharacterized LOC135265862 Neighboring gene uncharacterized LOC135265858 Neighboring gene uncharacterized LOC135265859 Neighboring gene microRNA mir-iab-8 Neighboring gene microRNA mir-iab-4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Tribolium homeotic gene Abdominal is homologous to abdominal-A of the Drosophila bithorax complex. Stuart JJ, et al. Development, 1993 Jan. PMID 7900986
    2. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    3. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    homeobox protein abdominal-A homolog
    Names
    AUGUSTUS-3.0.2_00894
    GLEAN_00894
    abdominal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039429.1 → NP_001034518.1  homeobox protein abdominal-A homolog

      See identical proteins and their annotated locations for NP_001034518.1

      Status: PROVISIONAL

      Source sequence(s)
      AF017415
      UniProtKB/Swiss-Prot
      Q07961
      UniProtKB/TrEMBL
      D6W912
      Conserved Domains (1) summary
      pfam00046
      Location:220 → 272
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

      Range
      7193573..7226940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008203021.3 → XP_008201243.1  homeobox protein abdominal-A homolog isoform X1

      Conserved Domains (1) summary
      pfam00046
      Location:224 → 276
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q07961.2 GenPept UniProtKB/Swiss-Prot:Q07961

    Gene LinkOut

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    Research Materials