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    LOC106150937 T-box transcription factor TBX3 [ Lingula anatina ]

    Gene ID: 106150937, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106150937
    Gene description
    T-box transcription factor TBX3
    See related
    EnsemblRapid:LOC106150937
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019773770.1 (264762..281184, complement)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013580807.1 (264762..281184, complement)

    NW_019773770.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 248-like Neighboring gene uncharacterized LOC106150940 Neighboring gene MORC family CW-type zinc finger protein 2 Neighboring gene uncharacterized LOC106150933 Neighboring gene uncharacterized LOC106150912

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    T-box transcription factor TBX3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019773770.1 Reference LinAna2.0 Primary Assembly

      Range
      264762..281184 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013523966.1 → XP_013379420.1  T-box transcription factor TBX3 isoform X2

      UniProtKB/TrEMBL
      A0A1S3GZW8
      Related
      XP_013379420.1, XM_013523966.1
      Conserved Domains (1) summary
      pfam00907
      Location:78 → 258
      T-box; T-box

    2. XM_013523965.1 → XP_013379419.1  T-box transcription factor TBX3 isoform X1

      UniProtKB/TrEMBL
      A0A1S3GZW8
      Related
      XP_013379419.1, XM_013523965.1
      Conserved Domains (1) summary
      pfam00907
      Location:78 → 258
      T-box; T-box

    3. XM_024074431.1 → XP_023930199.1  T-box transcription factor TBX3 isoform X4

      UniProtKB/TrEMBL
      A0A1S3GZW8
      Related
      XP_023930199.1, XM_024074431.1
      Conserved Domains (1) summary
      pfam00907
      Location:78 → 258
      T-box; T-box

    4. XM_013523969.1 → XP_013379423.1  T-box transcription factor TBX3 isoform X3

      UniProtKB/TrEMBL
      A0A1S3H091
      Related
      XP_013379423.1, XM_013523969.1
      Conserved Domains (1) summary
      cd00182
      Location:38 → 224
      TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...
    Nucleotide Protein
    Heading Accession and Version

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