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    aire autoimmune regulator [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102698850, updated on 10-Mar-2024

    Summary

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    Gene symbol
    aire
    Gene description
    autoimmune regulator
    See related
    Ensembl:ENSLOCG00000005382
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: LG14
    Exon count:
    14
    Annotation release Status Assembly LG Location
    101 current LepOcu1 (GCF_000242695.1) LG14 NC_023192.1 (9903698..9910865, complement)

    Linkage Group LG14 - NC_023192.1Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate-5-phosphatase D Neighboring gene uncharacterized LOC107079132 Neighboring gene RAB6B, member RAS oncogene family Neighboring gene solute carrier organic anion transporter family member 2A1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_023192.1 Chromosome LG14 Reference LepOcu1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in humoral immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    autoimmune regulator

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LepOcu1 Primary Assembly

    Genomic

    1. NC_023192.1 Reference LepOcu1 Primary Assembly

      Range
      9903698..9910865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015361075.1 → XP_015216561.1  autoimmune regulator isoform X3

      UniProtKB/TrEMBL
      W5MDN0
      Conserved Domains (4) summary
      cd15539
      Location:274 → 315
      PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
      cd15540
      Location:387 → 427
      PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
      pfam03172
      Location:11 → 107
      Sp100; Sp100 domain
      cl02536
      Location:200 → 256
      SAND; SAND domain

    2. XM_015361074.1 → XP_015216560.1  autoimmune regulator isoform X2

      UniProtKB/TrEMBL
      W5MDN0
      Conserved Domains (4) summary
      cd15539
      Location:274 → 316
      PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
      cd15540
      Location:387 → 427
      PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
      pfam03172
      Location:11 → 107
      Sp100; Sp100 domain
      cl02536
      Location:200 → 256
      SAND; SAND domain

    3. XM_015361073.1 → XP_015216559.1  autoimmune regulator isoform X1

      UniProtKB/TrEMBL
      W5MDN0
      Related
      ENSLOCP00000006489.1, ENSLOCT00000006497.1
      Conserved Domains (4) summary
      cd15539
      Location:274 → 316
      PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
      cd15540
      Location:388 → 428
      PHD2_AIRE; PHD finger 2 found in autoimmune regulator (AIRE)
      pfam03172
      Location:11 → 107
      Sp100; Sp100 domain
      cl02536
      Location:200 → 256
      SAND; SAND domain
    Nucleotide Protein
    Heading Accession and Version

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