U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    pdxdc1 pyridoxal-dependent decarboxylase domain containing 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100497493, updated on 30-Sep-2021

    Summary

    Official Symbol
    pdxdc1provided by Xenbase
    Official Full Name
    pyridoxal-dependent decarboxylase domain containing 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-1005631
    See related
    EnsemblRapid:ENSXETG00000005533
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See pdxdc1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (34266432..34310669)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (28361814..28403902)

    Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene meiosis regulator and mRNA stability factor 1 Neighboring gene bMERB domain containing 1 Neighboring gene posterior protein-like Neighboring gene N-terminal asparagine amidase Neighboring gene RRN3 homolog, RNA polymerase I transcription factor

    Genomic regions, transcripts, and products

    General gene information

    Homology

    General protein information

    Preferred Names
    pyridoxal-dependent decarboxylase domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      34266432..34310669
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002937681.5XP_002937727.1  pyridoxal-dependent decarboxylase domain-containing protein 1

      Related
      ENSXETP00000077785.2, ENSXETT00000094540.2
      Conserved Domains (2) summary
      cl00057
      Location:608758
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
      cl18945
      Location:205469
      AAT_I; Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the ...