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    SP110 SP110 nuclear body protein [ Sus scrofa (pig) ]

    Gene ID: 100519278, updated on 9-Mar-2022

    Summary

    Official Symbol
    SP110provided by VGNC
    Official Full Name
    SP110 nuclear body proteinprovided by VGNC
    Primary source
    VGNC:VGNC:96367
    See related
    EnsemblRapid:ENSSSCG00000016261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Broad expression in spleen (RPKM 20.8), lung (RPKM 12.1) and 8 other tissues See more
    Orthologs
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    Genomic context

    See SP110 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (131169911..131226543, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 15 NC_010457.4 (144854882..144909261, complement)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106508137 Neighboring gene probable G-protein coupled receptor 148 Neighboring gene glucosamine 6-phosphate N-acetyltransferase pseudogene Neighboring gene uncharacterized LOC110257073 Neighboring gene SP140 nuclear body protein Neighboring gene nuclear body protein SP140-like protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      131169911..131226543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021075650.1XP_020931309.1  sp110 nuclear body protein isoform X5

      Conserved Domains (5) summary
      pfam01342
      Location:378453
      SAND; SAND domain
      pfam03172
      Location:5103
      HSR; HSR domain
      cl02556
      Location:535636
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:470511
      PHD_SF; PHD finger superfamily
      cl26464
      Location:120342
      Atrophin-1; Atrophin-1 family
    2. XM_021075651.1XP_020931310.1  sp110 nuclear body protein isoform X6

      Related
      ENSSSCP00000053159.3, ENSSSCT00000038109.3
      Conserved Domains (5) summary
      pfam01342
      Location:378453
      SAND; SAND domain
      pfam03172
      Location:5103
      HSR; HSR domain
      cl02556
      Location:535633
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:470511
      PHD_SF; PHD finger superfamily
      cl26464
      Location:120342
      Atrophin-1; Atrophin-1 family
    3. XM_021075649.1XP_020931308.1  sp110 nuclear body protein isoform X4

      Related
      ENSSSCP00000045556.3, ENSSSCT00000063867.3
      Conserved Domains (5) summary
      pfam01342
      Location:366441
      SAND; SAND domain
      pfam03172
      Location:15113
      HSR; HSR domain
      cl02556
      Location:523621
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:458499
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130363
      Atrophin-1; Atrophin-1 family
    4. XM_021075648.1XP_020931307.1  sp110 nuclear body protein isoform X3

      Conserved Domains (5) summary
      pfam01342
      Location:366441
      SAND; SAND domain
      pfam03172
      Location:15113
      HSR; HSR domain
      cl02556
      Location:523624
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:458499
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130363
      Atrophin-1; Atrophin-1 family
    5. XM_021075647.1XP_020931306.1  sp110 nuclear body protein isoform X2

      Conserved Domains (5) summary
      pfam01342
      Location:388463
      SAND; SAND domain
      pfam03172
      Location:15113
      HSR; HSR domain
      cl02556
      Location:545643
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:480521
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130352
      Atrophin-1; Atrophin-1 family
    6. XM_021075646.1XP_020931305.1  sp110 nuclear body protein isoform X1

      Related
      ENSSSCP00000056418.2, ENSSSCT00000041167.2
      Conserved Domains (5) summary
      pfam01342
      Location:388463
      SAND; SAND domain
      pfam03172
      Location:15113
      HSR; HSR domain
      cl02556
      Location:545646
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:480521
      PHD_SF; PHD finger superfamily
      cl26464
      Location:130352
      Atrophin-1; Atrophin-1 family
    7. XM_021075655.1XP_020931314.1  sp110 nuclear body protein isoform X10

      Conserved Domains (5) summary
      pfam01342
      Location:277352
      SAND; SAND domain
      pfam03172
      Location:124
      HSR; HSR domain
      cl02556
      Location:434532
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:369410
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41274
      Atrophin-1; Atrophin-1 family
    8. XM_021075654.1XP_020931313.1  sp110 nuclear body protein isoform X9

      Conserved Domains (5) summary
      pfam01342
      Location:277352
      SAND; SAND domain
      pfam03172
      Location:124
      HSR; HSR domain
      cl02556
      Location:434535
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:369410
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41274
      Atrophin-1; Atrophin-1 family
    9. XM_021075653.1XP_020931312.1  sp110 nuclear body protein isoform X8

      Conserved Domains (5) summary
      pfam01342
      Location:299374
      SAND; SAND domain
      pfam03172
      Location:124
      HSR; HSR domain
      cl02556
      Location:456554
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:391432
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41263
      Atrophin-1; Atrophin-1 family
    10. XM_021075652.1XP_020931311.1  sp110 nuclear body protein isoform X7

      Conserved Domains (5) summary
      pfam01342
      Location:299374
      SAND; SAND domain
      pfam03172
      Location:124
      HSR; HSR domain
      cl02556
      Location:456557
      Bromodomain; Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
      cl22851
      Location:391432
      PHD_SF; PHD finger superfamily
      cl26464
      Location:41263
      Atrophin-1; Atrophin-1 family