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    GM2A GM2 ganglioside activator [ Canis lupus familiaris (dog) ]

    Gene ID: 100855818, updated on 23-Dec-2021

    Summary

    Official Symbol
    GM2Aprovided by VGNC
    Official Full Name
    GM2 ganglioside activatorprovided by VGNC
    Primary source
    VGNC:VGNC:41285
    See related
    Ensembl:ENSCAFG00845005428
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
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    Genomic context

    See GM2A in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (58440543..58454108, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (57818863..57832428, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (58860464..58874029, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (58258206..58271770, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (58356896..58370443, complement)
    105 previous assembly CanFam3.1 (GCF_000002285.3) 4 NC_006586.3 (58002438..58016003, complement)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 36 member 2 Neighboring gene solute carrier family 36 member 3 Neighboring gene rab9 effector protein with kelch motifs-like Neighboring gene coiled-coil domain containing 69 Neighboring gene uncharacterized LOC111095589 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      58440543..58454108 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038663590.1XP_038519518.1  ganglioside GM2 activator

      Related
      ENSCAFP00845007554.1, ENSCAFT00845009666.1
      Conserved Domains (1) summary
      cl00274
      Location:36195
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      58258206..58271770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038473894.1XP_038329822.1  ganglioside GM2 activator

      Conserved Domains (1) summary
      cl00274
      Location:36195
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      58356896..58370443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038599285.1XP_038455213.1  ganglioside GM2 activator

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      58860464..58874029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038534984.1XP_038390912.1  ganglioside GM2 activator

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      57818863..57832428 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003639011.4XP_003639059.1  ganglioside GM2 activator

      UniProtKB/TrEMBL
      F1P8U3
      Conserved Domains (1) summary
      cl00274
      Location:36195
      ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...
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