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    CT47A5 cancer/testis antigen family 47 member A5 [ Homo sapiens (human) ]

    Gene ID: 728072, updated on 23-Nov-2021

    Summary

    Official Symbol
    CT47A5provided by HGNC
    Official Full Name
    cancer/testis antigen family 47 member A5provided by HGNC
    Primary source
    HGNC:HGNC:33286
    See related
    Ensembl:ENSG00000237957 MIM:300784
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CT47.5
    Expression
    Restricted expression toward testis (RPKM 6.0) See more
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    Genomic context

    See CT47A5 in Genome Data Viewer
    Location:
    Xq24
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109.20211119 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (120963026..120966446, complement)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (120096880..120100202, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene cancer/testis antigen family 47 member A7 Neighboring gene cancer/testis antigen family 47 member A6 Neighboring gene cancer/testis antigen family 47 member A4 Neighboring gene cancer/testis antigen family 47 member A3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    cancer/testis antigen 47A
    Names
    CT47
    cancer/testis CT47 family, member 5
    cancer/testis antigen 47

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080142.2NP_001073611.1  cancer/testis antigen 47A

      See identical proteins and their annotated locations for NP_001073611.1

      Status: VALIDATED

      Source sequence(s)
      AL670379
      Consensus CDS
      CCDS35387.1
      UniProtKB/Swiss-Prot
      Q5JQC4
      Related
      ENSP00000390070.2, ENST00000439466.3
      Conserved Domains (1) summary
      pfam15623
      Location:1263
      CT47; Cancer/testis gene family 47

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

      Range
      120963026..120966446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011531384.2XP_011529686.1  cancer/testis antigen 47A isoform X1

      See identical proteins and their annotated locations for XP_011529686.1

      Conserved Domains (1) summary
      pfam15623
      Location:1247
      CT47; Cancer/testis gene family 47

    Reference GRCh38.p13 PATCHES

    Genomic

    1. NW_021160027.1 Reference GRCh38.p13 PATCHES

      Range
      282426..285748 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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