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    D1P28_gp1 polyprotein [ Bovine rhinitis A virus ]

    Gene ID: 37616468, updated on 18-Aug-2023

    Summary

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    Gene symbol
    D1P28_gp1
    Gene description
    polyprotein
    Locus tag
    D1P28_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bovine rhinitis A virus (strain: Sd-1, nat-host: bovine)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Aphthovirus
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    Genomic context

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    Sequence:
    NC_038303.1 (538..7194)

    NC_038303.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_038303.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Bovine rhinitis viruses are common in U.S. cattle with bovine respiratory disease. Hause BM, et al. PLoS One, 2015. PMID 25789939, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    Lab
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    2C
    3A
    VPg
    3Cpro
    3Dpol

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_038303.1 Reference assembly

      Range
      538..7194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009505600.1 polyprotein [Bovine rhinitis A virus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0D5XR02, A0A168M6V6
      Conserved Domains (7) summary
      cd00205
      Location:543 → 710
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1543 → 1723
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1202 → 1304
      RNA_helicase; RNA helicase
      pfam05408
      Location:6 → 168
      Peptidase_C28; Foot-and-mouth virus L-proteinase
      pfam08935
      Location:180 → 268
      VP4_2; Viral protein VP4 subunit
      cl02808
      Location:1762 → 2213
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:297 → 466
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    2. YP_009508908.1 Lab

      Conserved Domains (1) summary
      pfam05408
      Location:6 → 168
      Peptidase_C28; Foot-and-mouth virus L-proteinase

    3. YP_009508909.1 VP4

      Conserved Domains (1) summary
      pfam08935
      Location:1 → 62
      VP4_2; Viral protein VP4 subunit

    4. YP_009508910.1 VP2

      Conserved Domains (1) summary
      cl13999
      Location:25 → 194
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_009508911.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:47 → 214
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_009508912.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:64 → 209
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    7. YP_009508913.1 2A

    8. YP_009508914.1 2B

    9. YP_009508915.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:106 → 208
      RNA_helicase; RNA helicase

    10. YP_009508916.1 3A

    11. YP_009508917.1 VPg

    12. YP_009508918.1 3Cpro

      Conserved Domains (1) summary
      pfam00548
      Location:3 → 183
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    13. YP_009508919.1 3Dpol

      Conserved Domains (1) summary
      cl02808
      Location:13 → 464
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
    Nucleotide Protein
    Heading Accession and Version

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