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    C416_gp1 polyprotein [ Caladenia virus A ]

    Gene ID: 13564461, updated on 16-Aug-2018

    Summary

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    Gene symbol
    C416_gp1
    Gene description
    polyprotein
    Locus tag
    C416_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caladenia virus A (isolate: KP1, nat-host: Caladenia latifolia)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Poacevirus; unclassified Poacevirus
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    Genomic context

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    Sequence:
    NC_018572.1 (367..9594)

    NC_018572.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018572.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Caladenia virus A, an unusual new member of the family Potyviridae from terrestrial orchids in Western Australia. Wylie SJ, et al. Arch Virol, 2012 Dec. PMID 22914963

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    P1
    HC-Pro
    P3
    6K1
    CI
    6K2
    VPg
    Nia-Pro
    NIb
    CP

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018572.1 Reference assembly

      Range
      367..9594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006666511.1 polyprotein [Caladenia virus A]

      See identical proteins and their annotated locations for YP_006666511.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      J7KIS5
      Conserved Domains (9) summary
      smart00487
      Location:1252 → 1378
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1252 → 1372
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01577
      Location:208 → 337
      Peptidase_S30; Potyvirus P1 protease
      pfam00271
      Location:1423 → 1536
      Helicase_C; Helicase conserved C-terminal domain
      pfam00767
      Location:2839 → 3070
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:590 → 812
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:2097 → 2288
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1561 → 1837
      Poty_PP; Potyviridae polyprotein
      cl02808
      Location:2328 → 2754
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_006666638.1 P1

      Conserved Domains (1) summary
      pfam01577
      Location:208 → 337
      Peptidase_S30; Potyvirus P1 protease

    3. YP_006666639.1 HC-Pro

      Conserved Domains (1) summary
      pfam00851
      Location:244 → 466
      Peptidase_C6; Helper component proteinase

    4. YP_006666640.1 P3

      Conserved Domains (1) summary
      pfam15233
      Location:125 → 184
      SYCE1; Synaptonemal complex central element protein 1

    5. YP_006666641.1 6K1

    6. YP_006666642.1 CI

      Conserved Domains (4) summary
      smart00487
      Location:86 → 212
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:86 → 206
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00271
      Location:257 → 370
      Helicase_C; Helicase conserved C-terminal domain
      pfam08440
      Location:395 → 649
      Poty_PP; Potyviridae polyprotein

    7. YP_006666643.1 6K2

    8. YP_006666644.1 VPg

    9. YP_006666645.1 Nia-Pro

      Conserved Domains (1) summary
      pfam00863
      Location:27 → 218
      Peptidase_C4; Peptidase family C4

    10. YP_006666646.1 NIb

      Conserved Domains (1) summary
      cl02808
      Location:29 → 455
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    11. YP_006666647.1 CP

      Conserved Domains (1) summary
      pfam00767
      Location:49 → 280
      Poty_coat; Potyvirus coat protein
    Nucleotide Protein
    Heading Accession and Version

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