The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference assembly

Genomic

1. NC_018506.1 Reference assembly

   Range

   713..7723

   Download

   GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

1. YP_006607894.1 polyprotein [limnipivirus A1]

   See identical proteins and their annotated locations for YP_006607894.1

   Status: PROVISIONAL

   UniProtKB/TrEMBL

   J7HCF4

   Conserved Domains (4) summary

   cd00205
   Location:334 → 462

   rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

   pfam00548
   Location:1657 → 1827

   Peptidase_C3; 3C cysteine protease (picornain 3C)

   pfam00910
   Location:1309 → 1407

   RNA_helicase; RNA helicase

   cl02808
   Location:1861 → 2322

   RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

2. YP_006628177.1 VP0 capsid protein

   Conserved Domains (1) summary

   cd00205
   Location:77 → 233

   rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

3. YP_006628178.1 VP3 capsid protein

   Conserved Domains (1) summary

   cd00205
   Location:96 → 224

   rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

4. YP_006628179.1 VP1 capsid protein

5. YP_006628180.1 2A1

6. YP_006628181.1 2A2

7. YP_006628182.1 2B

8. YP_006628183.1 2C

   Conserved Domains (1) summary

   pfam00910
   Location:134 → 232

   RNA_helicase; RNA helicase

9. YP_006628184.1 3A

10. YP_006628185.1 3B (VPg)

11. YP_006628186.1 3C proteinase

    Conserved Domains (1) summary

    pfam00548
    Location:9 → 179

    Peptidase_C3; 3C cysteine protease (picornain 3C)

12. YP_006628187.1 3D RdRP

    Conserved Domains (1) summary

    cd01699
    Location:143 → 427

    RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...