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    C930_gp1 polyprotein [ hunnivirus A1 ]

    Gene ID: 13778744, updated on 3-Sep-2022

    Summary

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    Gene symbol
    C930_gp1
    Gene description
    polyprotein
    Locus tag
    C930_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    hunnivirus A1 (strain: BHUV1/2008/HUN, nat-host: Bos taurus (cattle))
    Lineage
    Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Hunnivirus
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    Genomic context

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    Sequence:
    NC_018668.1 (733..7464)

    NC_018668.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018668.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two closely related novel picornaviruses in cattle and sheep in Hungary from 2008 to 2009, proposed as members of a new genus in the family Picornaviridae. Reuter G, et al. J Virol, 2012 Dec. PMID 23015712, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    L protein
    VP4
    VP2
    VP3
    VP1
    2A
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018668.1 Reference assembly

      Range
      733..7464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006792625.1 polyprotein [hunnivirus A1]

      See identical proteins and their annotated locations for YP_006792625.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      J9Y0I9
      Conserved Domains (6) summary
      cd00205
      Location:450 → 618
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1584 → 1762
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam08935
      Location:85 → 164
      VP4_2; Viral protein VP4 subunit
      cl13999
      Location:672 → 852
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00910
      Location:1232 → 1332
      RNA_helicase; RNA helicase
      cd23193
      Location:1883 → 2221
      ps-ssRNA_Picornaviridae; catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Picornaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses

    2. YP_006846316.1 L protein

    3. YP_006846317.1 VP4

      Conserved Domains (1) summary
      pfam08935
      Location:1 → 75
      VP4_2; Viral protein VP4 subunit

    4. YP_006846318.1 VP2

      Conserved Domains (1) summary
      cd00205
      Location:58 → 235
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_006846319.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:46 → 214
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_006846320.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:45 → 225
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    7. YP_006846321.1 2A

    8. YP_006846322.1 2B

    9. YP_006846323.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:115 → 215
      RNA_helicase; RNA helicase

    10. YP_006846324.1 3A

    11. YP_006846325.1 3B

    12. YP_006846326.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:5 → 183
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    13. YP_006846327.1 3D

      Conserved Domains (1) summary
      cd23193
      Location:96 → 434
      ps-ssRNA_Picornaviridae; catalytic core domain of RNA-dependent RNA polymerase (RdRp) in the family Picornaviridae of positive-sense single-stranded RNA [(+)ssRNA] viruses
    Protein Accession Links
    GenPept Link UniProtKB Link
    AFS33288.1

    Gene LinkOut

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