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    para-Rep1 satellite replication initiator protein 1 [ Black medic leafroll alphasatellite 1 ]

    Gene ID: 18982914, updated on 16-Aug-2018

    Summary

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    Gene symbol
    para-Rep1
    Gene description
    satellite replication initiator protein 1
    Locus tag
    DJ33_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Black medic leafroll alphasatellite 1 (isolate: Lerik-Xalifa_47, acronym: BMLRV-[AZ;47], nat-host: Pisum sativum)
    Lineage
    Viruses; Satellites; Satellite Nucleic Acids; Single stranded DNA satellites; Alphasatellites; Babu- and nanovirus-associated alphasatellites; unclassified Babu- and nanovirus-associated alphasatellites
    Also known as
    sat-Rep1
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    Genomic context

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    Sequence:
    NC_023875.1 (1..1030)

    NC_023875.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_023875.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome diversity and evidence of recombination and reassortment in nanoviruses from Europe. Grigoras I, et al. J Gen Virol, 2014 May. PMID 24515973

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Miscellaneous features

    • Loc: 1024-1030, 1-2 conserved nonanucleotide at replication origin

    regulatory

    • Loc: 31-38 regulatory_class = TATA_box
    • Loc: 918-923 regulatory_class = polyA_signal_sequence

    stem_loop

    • Loc: 1011-1030, 1-13

    General protein information

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    Preferred Names
    satellite replication initiator protein 1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_023875.1 Reference assembly

      Range
      1..1030
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009021872.1 satellite replication initiator protein 1 [Black medic leafroll alphasatellite 1]

      See identical proteins and their annotated locations for YP_009021872.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      V9TQB9
      Conserved Domains (3) summary
      pfam00910
      Location:169 → 264
      RNA_helicase; RNA helicase
      pfam02407
      Location:9 → 84
      Viral_Rep; Putative viral replication protein
      cl01531
      Location:105 → 160
      DUF1376; Protein of unknown function (DUF1376)
    Nucleotide Protein
    Heading Accession and Version

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