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    AZ43_gp1 polyprotein [ Caprine kobuvirus ]

    Gene ID: 18263318, updated on 18-Aug-2023

    Summary

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    Gene symbol
    AZ43_gp1
    Gene description
    polyprotein
    Locus tag
    AZ43_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Caprine kobuvirus (isolate: 12Q108, nat-host: black goat)
    Lineage
    Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Kodimesavirinae; Kobuvirus
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    Genomic context

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    Sequence:
    NC_023422.1 (684..8123)

    NC_023422.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_023422.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Novel Kobuvirus species identified from black goat with diarrhea. Oem JK, et al. Vet Microbiol, 2014 Aug 27. PMID 24984842

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    L
    VP0
    VP3
    VP1
    2A
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_023422.1 Reference assembly

      Range
      684..8123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009000902.1 polyprotein [Caprine kobuvirus]

      See identical proteins and their annotated locations for YP_009000902.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6M8PEW8, W5S7X3
      Conserved Domains (5) summary
      cd00205
      Location:617 → 789
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1831 → 1985
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1487 → 1590
      RNA_helicase; RNA helicase
      cl02808
      Location:2024 → 2473
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:886 → 1022
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    2. YP_009001370.1 L

    3. YP_009001371.1 VP0

      UniProtKB/TrEMBL
      A0A7S6UC07, A0A7S6UC17
      Conserved Domains (1) summary
      cd00205
      Location:202 → 363
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. YP_009001372.1 VP3

      UniProtKB/TrEMBL
      A0A7S6UC11, A0A7S6UC12, A0A7S6UC13, A0A7S6UC15, A0A7S6UC19, A0A7S6UC22, A0A7S6UC24, A0A7S6UC66, A0A7S6UC79, A0A7S6UCL1, A0A7S6ZQD4, A0A7S6ZQD5, A0A7S6ZQD6
      Conserved Domains (1) summary
      cd00205
      Location:46 → 218
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_009001373.1 VP1

      UniProtKB/TrEMBL
      A0A7S6UC23, A0A7S6UC25, A0A7S6UC26, A0A7S6UC54, A0A7S6ZQD9, A0A7S6ZQE0, A0A7S6ZQE1, A0A7S6ZQF1
      Conserved Domains (1) summary
      cl13999
      Location:92 → 228
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. YP_009001374.1 2A

    7. YP_009001375.1 2B

    8. YP_009001376.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:127 → 230
      RNA_helicase; RNA helicase

    9. YP_009001377.1 3A

    10. YP_009001378.1 3B

    11. YP_009001379.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:19 → 173
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. YP_009001380.1 3D

      UniProtKB/TrEMBL
      A0A7S6RMB5, A0A7S6RMB7, A0A7S6RMB8, A0A7S6RMN5, A0A7S6U552, A0A7S6U6W7, A0A7S6U855
      Conserved Domains (1) summary
      cl02808
      Location:12 → 461
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

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