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    KW71_gp1 polyprotein [ Chicken picornavirus 4 ]

    Gene ID: 20194306, updated on 16-Aug-2018

    Summary

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    Gene symbol
    KW71_gp1
    Gene description
    polyprotein
    Locus tag
    KW71_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Chicken picornavirus 4 (isolate: 5C, nat-host: Gallus gallus)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae
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    Genomic context

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    Sequence:
    NC_024768.1 (664..8898)

    NC_024768.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_024768.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Chickens host diverse picornaviruses originated from potential interspecies transmission with recombination. Lau SKP, et al. J Gen Virol, 2014 Sep. PMID 24906980

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    Names
    VP0
    VP3
    VP1
    hypothetical protein
    2A
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_024768.1 Reference assembly

      Range
      664..8898
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009054901.1 polyprotein [Chicken picornavirus 4]

      See identical proteins and their annotated locations for YP_009054901.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A076V863
      Conserved Domains (4) summary
      cd00205
      Location:339 → 545
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:2104 → 2251
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1651 → 1753
      RNA_helicase; RNA helicase
      cl02808
      Location:2286 → 2739
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...

    2. YP_009055025.1 VP0

      Conserved Domains (1) summary
      cd00205
      Location:113 → 271
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    3. YP_009055026.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:7 → 153
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. YP_009055027.1 VP1

      Conserved Domains (1) summary
      cl13999
      Location:40 → 217
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. YP_009055028.1 hypothetical protein

    6. YP_009055029.1 2A

    7. YP_009055030.1 2B

    8. YP_009055031.1 2C

      Conserved Domains (1) summary
      pfam00910
      Location:130 → 232
      RNA_helicase; RNA helicase

    9. YP_009055032.1 3A

    10. YP_009055033.1 3B

    11. YP_009055034.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:34 → 181
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. YP_009055035.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:14 → 467
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

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