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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference assembly
Genomic
-
NC_034245.1 Reference assembly
- Range
-
543..7199
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
YP_009352243.1 polyprotein [Bovine rhinovirus 1]
Status: PROVISIONAL
- UniProtKB/TrEMBL
-
A0A1U8W097
- Conserved Domains (7) summary
-
- cd00205
Location:543 → 710
- rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
- pfam00548
Location:1543 → 1723
- Peptidase_C3; 3C cysteine protease (picornain 3C)
- pfam00910
Location:1202 → 1304
- RNA_helicase; RNA helicase
- pfam05408
Location:6 → 168
- Peptidase_C28; Foot-and-mouth virus L-proteinase
- pfam08935
Location:180 → 268
- VP4_2; Viral protein VP4 subunit
- cl02808
Location:1762 → 2213
- RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
- cl13999
Location:297 → 466
- rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...