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    ACA13_gp1 polyprotein [ Ampivirus A1 ]

    Gene ID: 24528025, updated on 17-Aug-2018

    Summary

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    Gene symbol
    ACA13_gp1
    Gene description
    polyprotein
    Locus tag
    ACA13_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ampivirus A1 (strain: NEWT/2013/HUN, nat-host: Lissotriton vulgaris (common newt))
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae
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    Genomic context

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    Sequence:
    NC_027214.1 (971..9112)

    NC_027214.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_027214.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A highly divergent picornavirus in an amphibian, the smooth newt (Lissotriton vulgaris). Reuter G, et al. J Gen Virol, 2015 Sep. PMID 26018961, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_027214.1 Reference assembly

      Range
      971..9112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009143521.1 polyprotein [Ampivirus A1]

      See identical proteins and their annotated locations for YP_009143521.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0G3BEP0
      Conserved Domains (5) summary
      cd00205
      Location:450 → 585
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam08762
      Location:659 → 864
      CRPV_capsid; CRPV capsid protein like
      pfam00910
      Location:1445 → 1547
      RNA_helicase; RNA helicase
      cl02808
      Location:2177 → 2659
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:92 → 260
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    Nucleotide Protein
    Heading Accession and Version

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