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    AVT86_gp1 polyprotein [ Avisivirus Pf-CHK1/AsV ]

    Gene ID: 26641536, updated on 17-Aug-2018

    Summary

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    Gene symbol
    AVT86_gp1
    Gene description
    polyprotein
    Locus tag
    AVT86_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Avisivirus Pf-CHK1/AsV (strain: Pf-CHK1/AsV, nat-host: Gallus gallus domesticus (domestic chicken))
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae
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    Genomic context

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    Sequence:
    NC_028970.1 (562..7002)

    NC_028970.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_028970.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A diarrheic chicken simultaneously co-infected with multiple picornaviruses: Complete genome analysis of avian picornaviruses representing up to six genera. Boros Á, et al. Virology, 2016 Feb. PMID 26707271

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_028970.1 Reference assembly

      Range
      562..7002
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009215118.1 polyprotein [Avisivirus Pf-CHK1/AsV]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0U2TKX3
      Conserved Domains (8) summary
      cd00205
      Location:106 → 252
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      smart00382
      Location:1219 → 1341
      AAA; ATPases associated with a variety of cellular activities
      cd01699
      Location:1838 → 2090
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
      pfam00078
      Location:1859 → 2061
      RVT_1; Reverse transcriptase (RNA-dependent DNA polymerase)
      pfam00548
      Location:1508 → 1671
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1217 → 1316
      RNA_helicase; RNA helicase
      cl13999
      Location:571 → 690
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      cl21455
      Location:719 → 766
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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