U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    BkVgp1 hypothetical protein [ Aichivirus B ]

    Gene ID: 955942, updated on 18-Aug-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    BkVgp1
    Gene description
    hypothetical protein
    Locus tag
    BkVgp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Aichivirus B (strain: U-1)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Kobuvirus
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_004421.1 (809..8200)

    NC_004421.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_004421.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Isolation and characterization of a new species of kobuvirus associated with cattle. Yamashita T, et al. J Gen Virol, 2003 Nov. PMID 14573811

    GeneRIFs: Gene References Into Functions

    General protein information

    Go to the top of the page Help
    Preferred Names
    hypothetical protein
    Names
    L
    VP0
    VP3
    VP1
    2A
    2B
    2C
    3A
    3B
    3C
    3D

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004421.1 Reference assembly

      Range
      809..8200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_740257.1 unnamed protein product [Aichivirus B]

      See identical proteins and their annotated locations for NP_740257.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0S1S698, Q8BES6
      Conserved Domains (5) summary
      cd00205
      Location:602 → 773
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00548
      Location:1820 → 1968
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1470 → 1573
      RNA_helicase; RNA helicase
      cl02808
      Location:2007 → 2457
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
      cl13999
      Location:823 → 1008
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    2. NP_859018.1 L

    3. NP_859019.1 VP0

      Conserved Domains (1) summary
      cd00205
      Location:225 → 362
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    4. NP_859020.1 VP3

      Conserved Domains (1) summary
      cd00205
      Location:48 → 219
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    5. NP_859021.1 VP1

      UniProtKB/TrEMBL
      A0A218KSB6
      Conserved Domains (1) summary
      cl13999
      Location:46 → 231
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...

    6. NP_859022.1 2A

    7. NP_859023.1 2B

    8. NP_859024.1 2C

      Conserved Domains (2) summary
      pfam00910
      Location:127 → 230
      RNA_helicase; RNA helicase
      pfam04783
      Location:75 → 112
      DUF630; Protein of unknown function (DUF630)

    9. NP_859025.1 3A

    10. NP_859026.1 3B

    11. NP_859027.1 3C

      Conserved Domains (1) summary
      pfam00548
      Location:18 → 166
      Peptidase_C3; 3C cysteine protease (picornain 3C)

    12. NP_859028.1 3D

      Conserved Domains (1) summary
      cl02808
      Location:13 → 463
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.