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    D1P42_gp1 polyprotein [ Bat hepatovirus BUO2BF86Colafr2010 ]

    Gene ID: 37616494, updated on 2-Aug-2022

    Summary

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    Gene symbol
    D1P42_gp1
    Gene description
    polyprotein
    Locus tag
    D1P42_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bat hepatovirus BUO2BF86Colafr2010 (isolate: BUO2BF86Colafr2010, nat-host: Coleura afra)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Hepatovirus
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    Genomic context

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    Sequence:
    NC_038316.1 (724..7320)

    NC_038316.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_038316.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolutionary origins of hepatitis A virus in small mammals. Drexler JF, et al. Proc Natl Acad Sci U S A, 2015 Dec 8. PMID 26575627, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_038316.1 Reference assembly

      Range
      724..7320
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009505614.1 polyprotein [Bat hepatovirus BUO2BF86Colafr2010]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0S1M3C6
      Conserved Domains (6) summary
      cd00205
      Location:303 → 488
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00073
      Location:31 → 216
      Rhv; picornavirus capsid protein
      pfam00548
      Location:1519 → 1682
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      pfam00910
      Location:1189 → 1292
      RNA_helicase; RNA helicase
      pfam12944
      Location:552 → 719
      HAV_VP; Hepatitis A virus viral protein VP
      cl02808
      Location:1720 → 2182
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

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