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    CWT05_gp1 polyprotein [ Chequa iflavirus ]

    Gene ID: 35117679, updated on 2-Aug-2022

    Summary

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    Gene symbol
    CWT05_gp1
    Gene description
    polyprotein
    Locus tag
    CWT05_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Chequa iflavirus (isolate: A14-49.4, nat-host: Cherax quadricarinatus)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Iflaviridae; unclassified Iflaviridae
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    Genomic context

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    Sequence:
    NC_036389.1 (942..9887)

    NC_036389.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_036389.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Discovery of a novel Picornavirales, Chequa iflavirus, from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Queensland, Australia. Sakuna K, et al. Virus Res, 2017 Jun 15. PMID 28676258

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_036389.1 Reference assembly

      Range
      942..9887
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009444707.1 polyprotein [Chequa iflavirus]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2H4QGG8
      Conserved Domains (4) summary
      cd00205
      Location:671 → 801
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      pfam00910
      Location:1598 → 1703
      RNA_helicase; RNA helicase
      cl02808
      Location:2481 → 2977
      RT_like; Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, retroviruses, group ...
      cl13999
      Location:404 → 529
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    Nucleotide Protein
    Heading Accession and Version

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