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    EXJ18_gp1 polyprotein [ Alfalfa virus F ]

    Gene ID: 41702090, updated on 1-Aug-2022

    Summary

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    Gene symbol
    EXJ18_gp1
    Gene description
    polyprotein
    Locus tag
    EXJ18_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Alfalfa virus F (isolate: SM-1_C50, nat-host: Medicago sativa (alfalfa))
    Lineage
    Viruses; Riboviria; Tymovirales; Tymoviridae; Marafivirus
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    Genomic context

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    Sequence:
    NC_040565.1 (214..6603)

    NC_040565.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_040565.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    polyprotein
    YP_009551972.1
    • contains methyltransferase, endopeptidase, RNA helicase, RNA dependent RNA polymerase and coat protein motifs

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_040565.1 Reference assembly

      Range
      214..6603
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_009551972.1 polyprotein [Alfalfa virus F]

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2S0SV86
      Conserved Domains (5) summary
      pfam00978
      Location:1520 → 1681
      RdRP_2; RNA dependent RNA polymerase
      pfam00983
      Location:1940 → 2091
      Tymo_coat; Tymovirus coat protein
      pfam05381
      Location:797 → 890
      Peptidase_C21; Tymovirus endopeptidase
      pfam01443
      Location:981 → 1213
      Viral_helicase1; Viral (Superfamily 1) RNA helicase
      pfam01660
      Location:99 → 380
      Vmethyltransf; Viral methyltransferase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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