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    BVDV-3-TH04_gp1 polyprotein [ Bovine viral diarrhea virus 3 Th/04_KhonKaen ]

    Gene ID: 7996356, updated on 18-Aug-2023

    Summary

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    Gene symbol
    BVDV-3-TH04_gp1
    Gene description
    polyprotein
    Locus tag
    BVDV-3-TH04_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bovine viral diarrhea virus 3 Th/04_KhonKaen (strain: Th/04_KhonKaen, nat-host: bovine)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Pestivirus
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    Genomic context

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    Sequence:
    NC_012812.1 (384..12083)

    NC_012812.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_012812.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Virus recovery and full-length sequence analysis of atypical bovine pestivirus Th/04_KhonKaen. Liu L, et al. Vet Microbiol, 2009 Jul 2. PMID 19349128

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_012812.1 Reference assembly

      Range
      384..12083
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_002967452.1 polyprotein [Bovine viral diarrhea virus 3 Th/04_KhonKaen]

      See identical proteins and their annotated locations for YP_002967452.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A411FAP1, C5H8E4
      Conserved Domains (9) summary
      cd00046
      Location:1814 → 1940
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd01699
      Location:3417 → 3705
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
      pfam00271
      Location:1982 → 2098
      Helicase_C; Helicase conserved C-terminal domain
      pfam05550
      Location:1 → 168
      Peptidase_C53; Pestivirus Npro endopeptidase C53
      pfam05578
      Location:1588 → 1798
      Peptidase_S31; Pestivirus NS3 polyprotein peptidase S31
      pfam11889
      Location:174 → 219
      DUF3409; Domain of unknown function (DUF3409)
      pfam12387
      Location:1321 → 1520
      Peptidase_C74; Pestivirus NS2 peptidase
      pfam16329
      Location:693 → 1028
      Pestivirus_E2; Pestivirus envelope glycoprotein E2
      cl00208
      Location:297 → 355
      RNase_T2; Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf ...
    Nucleotide Protein
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