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    B391_gp1 polyprotein [ Arracacha mottle virus ]

    Gene ID: 13280754, updated on 16-Aug-2018

    Summary

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    Gene symbol
    B391_gp1
    Gene description
    polyprotein
    Locus tag
    B391_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Arracacha mottle virus (isolate: C-17, nat-host: Arracacia xanthorrhiza)
    Lineage
    Viruses; ssRNA viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae; Potyvirus
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    Genomic context

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    Location:
    clone: 15
    Sequence:
    NC_018176.1 (27..9434)

    NC_018176.1Genomic Context describing neighboring genes

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_018176.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of a member of a new Potyvirus species infecting arracacha in Brazil. Orílio AF, et al. Arch Virol, 2009. PMID 19109690

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    polyprotein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_018176.1 Reference assembly

      Range
      27..9434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_006522440.1 polyprotein [Arracacha mottle virus]

      See identical proteins and their annotated locations for YP_006522440.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A1C2E6
      Conserved Domains (10) summary
      smart00487
      Location:1265 → 1437
      DEXDc; DEAD-like helicases superfamily
      cd00046
      Location:1287 → 1413
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam01577
      Location:102 → 346
      Peptidase_S30; Potyvirus P1 protease
      pfam00271
      Location:1457 → 1567
      Helicase_C; Helicase conserved C-terminal domain
      pfam00767
      Location:2901 → 3133
      Poty_coat; Potyvirus coat protein
      pfam00851
      Location:368 → 803
      Peptidase_C6; Helper component proteinase
      pfam00863
      Location:2083 → 2316
      Peptidase_C4; Peptidase family C4
      pfam08440
      Location:1592 → 1864
      Poty_PP; Potyviridae polyprotein
      pfam13608
      Location:822 → 1258
      Potyvirid-P3; Protein P3 of Potyviral polyprotein
      cl02808
      Location:2348 → 2815
      RT_like; RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family. An RT gene is usually indicative of a mobile element such as a retrotransposon or retrovirus. RTs occur in a variety of mobile elements, including retrotransposons, ...
    Nucleotide Protein
    Heading Accession and Version

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