Genome

Bacteroides stercoris Normal human gut bacterium Lineage: Bacteria[37515]; Bacteroidota[4364]; Bacteroidia[1426]; Bacteroidales[1326]; Bacteroidaceae[158]; Bacteroides[84]; Bacteroides stercoris[2]

Bacteroides. This group of microbes constitute the most abundant members of the intestinal microflora of mammals. Typically they are symbionts, but they can become opportunistic pathogens in the peritoneal (intra-abdominal) cavity. This organism produces many extracellular enzymes which assist in the breakdown of complex plant polysaccharides More...such as cellulose and hemicellulose and host-derived polysaccharides such as mucopolysaccharides.Bacteroides stercoris. Bacteroides stercoris has been isolated from human feces. It has been found in 16S rDNA sequence-based enumerations of the colonic microbiota of adult humans (Eckburg et. al. (2005), Ley et. al. (2006)). Less...

Summary Sequence data:  genome assemblies: 191; sequence reads: 1  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 3.83382  median protein count: 3263  median GC%: 46.1 Publications (limited to 20 most recent records) MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy. Rocha U, et al. Mol Ecol Resour 2024 Feb Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices. Huang KD, et al. Cell Rep Med 2024 Mar 19 The Parkinson's drug entacapone disrupts gut microbiome homeostasis via iron sequestration. Pereira FC, et al. bioRxiv 2023 Nov 13 Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing. Plaza Oñate F, et al. Microbiol Resour Announc 2022 Jun 16 Design, construction, and in vivo augmentation of a complex gut microbiome. Cheng AG, et al. Cell 2022 Sep 15 Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome. Ravi A, et al. Commun Biol 2022 Sep 8 Human reference gut microbiome catalog including newly assembled genomes from under-represented Asian metagenomes. Kim CY, et al. Genome Med 2021 Aug 27 MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8 Mediterraneibacter butyricigenes sp. nov., a butyrate-producing bacterium isolated from human faeces. Kim JS, et al. J Microbiol 2019 Jan Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. Jiang X, et al. Science 2019 Jan 11 A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Poyet M, et al. Nat Med 2019 Sep Bacteroides faecalis sp. nov., isolated from human faeces. Yu SY, et al. Int J Syst Evol Microbiol 2019 Dec Anaerotignum faecicola sp. nov., isolated from human faeces. Choi SH, et al. J Microbiol 2019 Dec Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria. Olm MR, et al. Sci Adv 2019 Dec EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL, et al. Nucleic Acids Res 2018 Jan 4 A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Parks DH, et al. Nat Biotechnol 2018 Nov Type VI secretion systems of human gut Bacteroidales segregate into three genetic architectures, two of which are contained on mobile genetic elements. Coyne MJ, et al. BMC Genomics 2016 Jan 15 More...  Representative (genome information for reference and representative genomes) Reference genome:   Bacteroides stercoris ATCC 43183 Submitter: Washington University Genome Sequencing Center Morphology: Gram:Negative, Shape:Bacilli, Motility:No Environment: OxygenReq:Anaerobic, TemperatureRange:Mesophilic, Habitat:HostAssociated Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Un - . - 4.01 45.8 3,247 15 56 3 3,392 71 Dendrogram (based on genomic BLAST)