Danio rerio
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Organism Overview ; Genome Assembly and Annotation report
Danio rerio (zebrafish)

Zebrafish reference genome sequence

Lineage: Eukaryota[8701]; Metazoa[4228]; Chordata[2100]; Craniata[2077]; Vertebrata[2077]; Euteleostomi[2060]; Actinopterygii[772]; Neopterygii[766]; Teleostei[763]; Ostariophysi[66]; Cypriniformes[45]; Danionidae[9]; Danioninae[9]; Danio[7]; Danio rerio[1]

Summary

Submitter: Genome Reference Consortium
Assembly level: Chromosome
Assembly: GCA_000002035.4 GRCz11 scaffolds: 2,848 contigs: 20,680 N50: 1,422,317 L50: 219
BioProjects: PRJNA13922, PRJNA11776
Statistics: total length (Mb): 1679.2
 protein count: 57100
 GC%: 36.6374

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
Chr1NC_007112.7CM002885.259.5836.42,176-313261,44422
Chr2NC_007113.7CM002886.259.6436.72,229-762741,4648
Chr3NC_007114.7CM002887.262.6336.92,436-3463621,99223
Chr4NC_007115.7CM002888.278.0938.42,450-5,7231,2527,90970
Chr5NC_007116.7CM002889.272.536.42,71311403951,6796
Chr6NC_007117.7CM002890.260.2736.42,123-522501,23816
Chr7NC_007118.7CM002891.274.2836.72,531-723221,64114
Chr8NC_007119.7CM002892.254.336.51,986-2402721,4526
Chr9NC_007120.7CM002893.256.4636.51,832-602261,0609
Chr10NC_007121.7CM002894.245.4236.61,779-121861,07614
Chr11NC_007122.7CM002895.245.4836.41,596-131669524
Chr12NC_007123.7CM002896.249.1836.31,679-1231571,0915
Chr13NC_007124.7CM002897.252.1936.51,805-462301,0466
Chr14NC_007125.7CM002898.252.6636.61,481-111709456
Chr15NC_007126.7CM002899.248.0436.81,814-1351931,22914
Chr16NC_007127.7CM002900.255.2736.51,996-173081,25511
Chr17NC_007128.7CM002901.253.4636.61,703-1091901,1119
Chr18NC_007129.7CM002902.251.0236.61,541-51799159
Chr19NC_007130.7CM002903.248.4536.41,762-71851,0387
Chr20NC_007131.7CM002904.255.236.61,890-2621921,3763
Chr21NC_007132.7CM002905.245.9336.61,948-2532371,3748
Chr22NC_007133.7CM002906.239.1337.01,674-1432931,2888
Chr23NC_007134.7CM002907.246.2236.71,755-112041,0155
Chr24NC_007135.7CM002908.242.1736.31,365-1813882310
Chr25NC_007136.7CM002909.237.536.61,453-721299784
MTNC_002333.2-0.0239.913222-37-
Un-.-334.0936.59,370-1,6721,8169,96671

Chromosomes

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