Genome

Bacteria (eubacteria) NBRP sequence Lineage: Bacteria[36436]

The National BioResource Project (NBRP) aims to enable Japan to structurally provide systematic accumulation, storage and provision of nationally recognized bioresources which are used widely in life science researches as materials. When National BioResource Project started in 2002 with support from the Ministry of Education, Culture, Science, Sports More...and Technology, NIG had been responsible for the systematic collection, storage, and distribution of E. coli and B. subtilis strains. Recently, post genome resources that were developed in Japan have been deposited in NBRP; E.coli and B. subtilis. The resources including the systematic deletion and insertion mutants, and genes clones now are opened for E. coli B. subtilis researchers. This time, to enrich the information of our E. coli and B. subtilis strains, we carried out the whole genome sequence. Less...

Summary Sequence data:  genome assemblies: 3563; sequence reads: 11423  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2.83514  median protein count: 2735  median GC%: 54.2 Publications (limited to 20 most recent records) Metagenomic insights into the microbial cooperative networks of a benz(a)anthracene-7,12-dione degrading community from a creosote-contaminated soil. Jiménez-Volkerink SN, et al. Sci Total Environ 2024 Jan 10 Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. Camargo AP, et al. ISME J 2023 Mar Relationships between fluid mixing, biodiversity, and chemosynthetic primary productivity in Yellowstone hot springs. Fernandes-Martins MC, et al. Environ Microbiol 2023 May Ecophysiology and genomics of the brackish water adapted SAR11 subclade IIIa. Lanclos VC, et al. ISME J 2023 Apr Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023 Distribution of Bacterial Endosymbionts of the Cardinium Clade in Plant-Parasitic Nematodes. Tarlachkov SV, et al. Int J Mol Sci 2023 Feb 2 Evolutionary ecology of microbial populations inhabiting deep sea sediments associated with cold seeps. Dong X, et al. Nat Commun 2023 Feb 28 Hologenome analysis reveals independent evolution to chemosymbiosis by deep-sea bivalves. Guo Y, et al. BMC Biol 2023 Mar 8 Cable bacteria with electric connection to oxygen attract flocks of diverse bacteria. Bjerg JJ, et al. Nat Commun 2023 Mar 23 Linking prokaryotic genome size variation to metabolic potential and environment. Rodríguez-Gijón A, et al. ISME Commun 2023 Mar 27 Dissolved storage glycans shaped the community composition of abundant bacterioplankton clades during a North Sea spring phytoplankton bloom. Sidhu C, et al. Microbiome 2023 Apr 17 Transcriptionally active nitrogen fixation and biosynthesis of diverse secondary metabolites by Dolichospermum and Aphanizomenon-like Cyanobacteria in western Lake Erie Microcystis blooms. Yancey CE, et al. Harmful Algae 2023 May Temporal disturbance of a model stream ecosystem by high microbial diversity from treated wastewater. Stach TL, et al. Microbiologyopen 2023 Apr Novel biological aqua crust enhances in situ metal(loid) bioremediation driven by phototrophic/diazotrophic biofilm. Wang G, et al. Microbiome 2023 May 18 Prokaryotic Life Associated with Coal-Fire Gas Vents Revealed by Metagenomics. Kadnikov VV, et al. Biology (Basel) 2023 May 15 Genome-resolved carbon processing potential of tropical peat microbiomes from an oil palm plantation. Bandla A, et al. Sci Data 2023 Jun 8 Enrichment and characterization of a nitric oxide-reducing microbial community in a continuous bioreactor. Garrido-Amador P, et al. Nat Microbiol 2023 Aug Bacterial and archaeal community distributions and cosmopolitanism across physicochemically diverse hot springs. Sriaporn C, et al. ISME Commun 2023 Aug 18 Potential for natural attenuation of crude oil hydrocarbons in benthic microbiomes near coastal communities in Kivalliq, Nunavut, Canada. Ji M, et al. Mar Pollut Bull 2023 Nov Putative novel hydrogen- and iron-oxidizing sheath-producing Zetaproteobacteria thrive at the Fåvne deep-sea hydrothermal vent field. Hribovšek P, et al. mSystems 2023 Nov 3 More...