Branchiostoma lanceolatum (ID 12487) - Genome

Branchiostoma lanceolatum (amphioxus)
Representative genome: Branchiostoma lanceolatum (assembly BraLan3)
Download sequences in FASTA format for genome, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Branchiostoma lanceolatum genome
All 2 genomes for species:
Browse the list
Download sequence and annotation from or GenBank

Try the NCBI Datasets Taxonomy page - a new way to access genomic data, including reference genomes

Display Settings:

Overview

Format

Summary

Send to:

Choose Destination

File
Clipboard
Collections

ID: 12487

Organism Overview ; Genome Assembly and Annotation report [2] ; Organelle Annotation Report [1]

Branchiostoma lanceolatum (amphioxus)

Branchiostoma lanceolatum overview

Lineage: Eukaryota[10856]; Metazoa[5115]; Chordata[2487]; Cephalochordata[6]; Leptocardii[6]; Amphioxiformes[6]; Branchiostomatidae[6]; Branchiostoma[5]; Branchiostoma lanceolatum[1]

Summary

Sequence data:

genome assemblies: 2

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 485.039

median protein count: 39310

median GC%: 40.6647

Publications (limited to 20 most recent records)

A single three-dimensional chromatin compartment in amphioxus indicates a stepwise evolution of vertebrate Hox bimodal regulation. Acemel RD, et al. Nat Genet 2016 Mar
Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates. Spruyt N, et al. Nucleic Acids Res 1998 Jul 1

Representative (genome information for reference and representative genomes)

Reference genome:

Branchiostoma lanceolatum BraLan3

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	Gene	Pseudogene
Chr	1	-	OV696686.1	43.86	41.6	3,816	2,559	6

Chr	2	-	OV696687.1	38.51	41.7	3,198	2,093	6

Chr	3	-	OV696688.1	34.61	41.7	3,075	2,120	5

Chr	4	-	OV696689.1	31.72	41.9	3,087	2,010	3

Chr	5	-	OV696690.1	25.7	41.7	2,281	1,445	2

Chr	6	-	OV696691.1	24.53	41.6	2,065	1,341	1

Chr	7	-	OV696692.1	24.23	41.8	2,126	1,477	5

Chr	8	-	OV696693.1	23.75	41.5	2,004	1,365	2

Chr	9	-	OV696694.1	23.23	41.5	1,889	1,288	4

Chr	10	-	OV696695.1	20.38	41.2	1,515	1,052	6

Chr	11	-	OV696696.1	20.37	41.5	1,687	1,157	7

Chr	12	-	OV696697.1	19.92	41.5	1,673	1,140	2

Chr	13	-	OV696698.1	19.78	41.6	1,659	1,051	2

Chr	14	-	OV696699.1	19.71	41.4	1,583	1,117	3

Chr	15	-	OV696700.1	19.38	41.3	1,393	918	3

Chr	16	-	OV696701.1	18.82	41.2	1,424	1,012	-

Chr	17	-	OV696702.1	18.21	41.2	1,221	849	-

Chr	18	-	OV696703.1	17.11	41.0	1,359	862	4

Chr	19	-	OV696704.1	15.32	41.0	1,191	831	8

Un	-	.	-	15.63	41.8	1,064	779	2

Genome

Display Settings:

Send to:

Summary

Publications (limited to 20 most recent records)

Representative (genome information for reference and representative genomes)

Chromosomes

Supplemental Content

Tools

Related information

Search details

Recent activity