Notothenia coriiceps (ID 10753) - Genome - NCBI

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Notothenia coriiceps (black rockcod)
Representative genome: Notothenia coriiceps (assembly NC01)
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ID: 10753

Organism Overview ; Organelle Annotation Report [1]

Notothenia coriiceps (black rockcod)

Notothenia coriiceps overview

Lineage: Eukaryota[11633]; Metazoa[5514]; Chordata[2675]; Craniata[2650]; Vertebrata[2650]; Euteleostomi[2628]; Actinopterygii[978]; Neopterygii[970]; Teleostei[966]; Neoteleostei[746]; Acanthomorphata[743]; Eupercaria[228]; Perciformes[167]; Notothenioidei[33]; Nototheniidae[12]; Notothenia[2]; Notothenia coriiceps[1]

Summary

Submitter:

Antarctic Fish Genome Project

Assembly level:

Scaffold

Assembly:

GCA_000735185.1 NC01 scaffolds: 38,657 contigs: 72,571 N50: 17,487 L50: 9,130

BioProjects:

PRJNA268318, PRJNA66471

Whole Genome Shotgun (WGS):

INSDC: AZAD00000000.1

Statistics:

total length (Mb): 636.614

protein count: 32182

GC%: 40.8002

NCBI Annotation Release:

Publications (limited to 20 most recent records)

The genome sequence of the Antarctic bullhead notothen reveals evolutionary adaptations to a cold environment. Shin SC, et al. Genome Biol 2014 Sep 25
High mitochondrial densities in the hearts of Antarctic icefishes are maintained by an increase in mitochondrial size rather than mitochondrial biogenesis. Urschel MR, et al. J Exp Biol 2008 Aug
Cold adaptation of microtubule assembly and dynamics. Structural interpretation of primary sequence changes present in the alpha- and beta-tubulins of Antarctic fishes. Detrich HW 3rd, et al. J Biol Chem 2000 Nov 24
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1

Replicon Info

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
		MT	NC_015653.1	-	0.02	46.1	13	2	22	-	37	-

	Un	-	.	-	636.6	40.8	32,169	-	509	3,007	28,075	303

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