Capnocytophaga ochracea (ID 3042) - Genome - NCBI

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Capnocytophaga ochracea
Representative genome: Capnocytophaga ochracea DSM 7271
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ID: 3042

Organism Overview ; Genome Assembly and Annotation report [15] ; Genome Tree report [10]

Capnocytophaga ochracea

Capnocytophaga ochracea overview

Lineage: Bacteria[37515]; Bacteroidota[4364]; Flavobacteriia[1575]; Flavobacteriales[1564]; Flavobacteriaceae[1100]; Capnocytophaga[17]; Capnocytophaga ochracea[1]

Capnocytophaga ochracea.These are Gram-negative, anaerobic gliding bacteria isolated from normal human supragingival plaque and from periodontal lesions.

Summary

Sequence data:

genome assemblies: 15; sequence reads: 2

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 2.66355

median protein count: 2190

median GC%: 39.5

Publications (limited to 20 most recent records)

FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science. Sichtig H, et al. Nat Commun 2019 Jul 25
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL, et al. Nucleic Acids Res 2018 Jan 4
A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. Roach DJ, et al. PLoS Genet 2015 Jul
Complete genome sequence of Capnocytophaga ochracea type strain (VPI 2845). Mavrommatis K, et al. Stand Genomic Sci 2009 Sep 24

Representative (genome information for reference and representative genomes)

Reference genome:

Capnocytophaga ochracea DSM 7271

Submitter: US DOE Joint Genome Institute (JGI-PGF)

Human Pathogen

Morphology: Gram:Negative, Shape:Bacilli, Motility:No

Environment: OxygenReq:Facultative, OptimumTemperature:35-37, TemperatureRange:Mesophilic, Habitat:HostAssociated

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	-	NC_013162.1	CP001632.1	2.61	39.6	2,173	12	47	3	2,264	29

Dendrogram (based on genomic BLAST)

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