Genome

Enterococcus hirae Enterococcus hirae overview Lineage: Bacteria[37505]; Bacillota[6130]; Bacilli[2619]; Lactobacillales[872]; Enterococcaceae[126]; Enterococcus[69]; Enterococcus hirae[1]

Enterococcus hirae.The strains form a distinct homology group, as determined byDNA-DNA hybridization. Isolated from chicken crops andpig intestines and from human and cattle sources. The cells are gram positive and nonmotile. Cells are ovoid and occur mostly in pairs or short chains. Facultatively anaerobic. This organism has been used More...to study cation transport and copper homeostasis. Less...

Summary Sequence data:  genome assemblies: 350; sequence reads: 1  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2.84176  median protein count: 2496  median GC%: 36.9 Publications (limited to 20 most recent records) Metagenome-assembled genomes indicate that antimicrobial resistance genes are highly prevalent among urban bacteria and multidrug and glycopeptide resistances are ubiquitous in most taxa. Magnúsdóttir S, et al. Front Microbiol 2023 Indole metabolism mechanisms in a new, efficient indole-degrading facultative anaerobe isolate Enterococcus hirae GDIAS-5. Deng JJ, et al. J Hazard Mater 2022 Jul 15 Persistence of transferable oxazolidinone resistance genes in enterococcal isolates from a swine farm in China. Huang Z, et al. Front Microbiol 2022 Linezolid Resistance Genes in Enterococci Isolated from Sediment and Zooplankton in Two Italian Coastal Areas. Fioriti S, et al. Appl Environ Microbiol 2021 Apr 13 Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. Gilroy R, et al. PeerJ 2021 Long-read metagenomics retrieves complete single-contig bacterial genomes from canine feces. Cuscó A, et al. BMC Genomics 2021 May 6 Clonal spread and horizontal transfer mediate dissemination of phenicol-oxazolidinone-tetracycline resistance gene poxtA in enterococci isolates from a swine farm in China. Lei CW, et al. Vet Microbiol 2021 Nov Large diversity of linezolid-resistant isolates discovered in food-producing animals through linezolid selective monitoring in Belgium in 2019. Timmermans M, et al. J Antimicrob Chemother 2021 Dec 24 MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8 Enterococci from Wild Magellanic Penguins (Spheniscus magellanicus) as an Indicator of Marine Ecosystem Health and Human Impact. Prichula J, et al. Appl Environ Microbiol 2020 Sep 17 Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. Jiang X, et al. Science 2019 Jan 11 FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science. Sichtig H, et al. Nat Commun 2019 Jul 25 A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Poyet M, et al. Nat Med 2019 Sep Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria. Olm MR, et al. Sci Adv 2019 Dec EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL, et al. Nucleic Acids Res 2018 Jan 4 Comparative genomics of Enterococcus spp. isolated from bovine feces. Beukers AG, et al. BMC Microbiol 2017 Mar 8 Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Parks DH, et al. Nat Microbiol 2017 Nov Draft Genome Sequences of Exfoliative Toxin A-Producing Staphylococcus aureus Strains B-7772 and B-7777 (CC8/ST2993) and B-7774 (CC15/ST2126), Isolated in a Maternity Hospital in the Central Federal District of Russia. Abaev I, et al. Genome Announc 2016 Mar 3 Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens. Dhanani AS, et al. PLoS One 2015 Complete Genome Sequence of Coriobacteriaceae Strain 68-1-3, a Novel Mucus-Degrading Isolate from the Swine Intestinal Tract. Looft T, et al. Genome Announc 2015 Oct 8 More...  Representative (genome information for reference and representative genomes) Reference genome:   Enterococcus hirae ASM227801v2 Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr - NZ_CP023011.2 CP023011.2 2.85 37.0 2,460 18 67 4 2,579 30 Dendrogram (based on genomic BLAST)