Genome

Setaria italica (foxtail millet) Setaria italica Organism overview Lineage: Eukaryota[15557]; Viridiplantae[1758]; Streptophyta[1641]; Embryophyta[1630]; Tracheophyta[1603]; Spermatophyta[1585]; Magnoliopsida[1558]; Liliopsida[245]; Poales[144]; Poaceae[120]; PACMAD clade[50]; Panicoideae[36]; Panicodae[15]; Paniceae[15]; Cenchrinae[5]; Setaria[2]; Setaria italica[1]

Setaria italica is an important food crop in India, China and Japan. It is also grown in Australia, North Africa and South America for hay and silage. Comparative genomics of foxtail millet with other Poaceae allows understanding of traits in the other domesticated crops.

Summary Sequence data:  genome assemblies: 2; sequence reads: 19  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 441.705  median protein count: 35844  median GC%: 46.2236 NCBI Annotation Release:  103 Publications (limited to 20 most recent records) Reference genome sequence of the model plant Setaria. Bennetzen JL, et al. Nat Biotechnol 2012 May 13 Foxtail millet: a sequence-driven grass model system. Doust AN, et al. Plant Physiol 2009 Jan  Representative (genome information for reference and representative genomes) Reference genome:   Setaria italica Setaria_italica_v2.0 Submitter: JGI Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr I NC_028450.1 CM003528.1 42.15 46.1 4,042 - 66 573 3,577 199 Chr II NC_028451.1 CM003529.1 49.2 46.1 4,580 - 67 562 4,090 260 Chr III NC_028452.1 CM003530.1 50.65 46.2 4,149 - 64 727 3,764 220 Chr IV NC_028453.1 CM003531.1 40.41 46.3 3,005 - 32 490 2,714 177 Chr V NC_028454.1 CM003532.1 47.25 46.4 5,028 - 67 585 4,416 253 Chr VI NC_028455.1 CM003533.1 36.01 46.1 2,541 - 31 460 2,395 174 Chr VII NC_028456.1 CM003534.1 35.96 46.3 3,588 - 55 479 3,131 216 Chr VIII NC_028457.1 CM003535.1 40.69 45.5 2,511 - 36 436 2,274 217 Chr IX NC_028458.1 CM003536.1 58.97 46.4 6,147 - 96 768 5,434 269 Pltd NC_022850.1 - 0.14 38.9 83 8 38 - 129 - Un - . - 4.44 46.6 170 - 26 28 200 16 Chromosomes Click on chromosome name to open Genome Data Viewer External Resources GOLD