Genome

Bos indicus (zebu cattle) zebu cattle Lineage: Eukaryota[15558]; Metazoa[7784]; Chordata[3583]; Craniata[3548]; Vertebrata[3548]; Euteleostomi[3503]; Mammalia[873]; Eutheria[699]; Laurasiatheria[340]; Artiodactyla[152]; Ruminantia[102]; Pecora[100]; Bovidae[72]; Bovinae[24]; Bos[10]; Bos indicus[1]

Bos indicus or zebu cattle is also commonly referred to as indicus cattle, brahmin cattle, or humped cattle. This cattle species was domesticated from wild cattle species in South Asia. Compared to European cattle (Bos taurus), zebu have a greater tolerance for temperatures above seventy degrees Fahrenheit and also have better resistence More...to some diseases such as rinderpest. Domesticated in India, zebu were introduced to Africa and Asia hundreds of years ago and are now found throughout the world in tropical and subtropical climates. They are commonly used as draft animals and for their production of meat, milk and leather. Less...

Summary Sequence data:  genome assemblies: 35; sequence reads: 7  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2679.75  median protein count: 35992  median GC%: 41.834 NCBI Annotation Release:  100 Publications (limited to 20 most recent records) A preliminary sketch of horn cancer transcriptome in Indian zebu cattle. Tripathi AK, et al. Gene 2012 Feb 1 Genome sequence and assembly of Bos indicus. Canavez FC, et al. J Hered 2012 May-Jun tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1  Representative (genome information for reference and representative genomes) Reference genome:   Bos indicus Bos_indicus_1.0 Submitter: Genoa Biotecnologia SA Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene master WGS - AGFL00000000.1 2,475.81 41.6 - - - - - - Chr 1 NC_032650.1 CM003021.1 161.11 40.8 1,433 - 24 165 1,063 159 Chr 2 NC_032651.1 CM003022.1 140.68 41.2 1,627 - 19 144 1,045 153 Chr 3 NC_032652.1 CM003023.1 127.87 42.3 2,269 - 133 193 1,650 245 Chr 4 NC_032653.1 CM003024.1 124.43 41.0 1,148 - 38 139 941 114 Chr 5 NC_032654.1 CM003025.1 125.64 42.0 2,001 - 19 196 1,518 255 Chr 6 NC_032655.1 CM003026.1 122.65 40.6 1,144 - 19 123 757 122 Chr 7 NC_032656.1 CM003027.1 111.95 42.4 2,022 - 33 166 1,461 193 Chr 8 NC_032657.1 CM003028.1 116.94 41.7 1,255 - 8 171 878 133 Chr 9 NC_032658.1 CM003029.1 108.1 40.5 778 - 15 120 628 126 Chr 10 NC_032659.1 CM003030.1 106.31 41.9 1,553 - 36 168 1,190 147 Chr 11 NC_032660.1 CM003031.1 110.26 43.2 1,587 - 16 167 1,078 108 Chr 12 NC_032661.1 CM003032.1 85.44 41.0 623 - 23 102 473 53 Chr 13 NC_032662.1 CM003033.1 84.43 44.0 1,315 - 16 217 910 81 Chr 14 NC_032663.1 CM003034.1 81.41 41.6 681 - 14 93 538 75 Chr 15 NC_032664.1 CM003035.1 84.8 42.4 1,533 - 21 100 1,253 220 Chr 16 NC_032665.1 CM003036.1 77.91 42.9 976 - 14 129 690 81 Chr 17 NC_032666.1 CM003037.1 76.52 42.7 994 - 20 112 693 75 Chr 18 NC_032667.1 CM003038.1 65.95 45.9 1,973 - 29 186 1,414 147 Chr 19 NC_032668.1 CM003039.1 65.32 46.3 2,072 - 47 202 1,384 107 Chr 20 NC_032669.1 CM003040.1 75.86 41.5 480 - 9 65 407 70 Chr 21 NC_032670.1 CM003041.1 69.31 43.2 837 - 11 104 605 100 Chr 22 NC_032671.1 CM003042.1 61.89 43.6 1,016 - 10 96 619 57 Chr 23 NC_032672.1 CM003043.1 53.33 43.8 1,147 - 155 140 972 85 Chr 24 NC_032673.1 CM003044.1 65.02 42.3 561 - 7 84 376 45 Chr 25 NC_032674.1 CM003045.1 44.04 47.1 1,240 - 51 96 832 57 Chr 26 NC_032675.1 CM003046.1 51.86 43.2 718 - 3 81 459 56 Chr 27 NC_032676.1 CM003047.1 48.75 42.2 356 - 6 70 303 33 Chr 28 NC_032677.1 CM003048.1 46.11 42.6 578 - 9 44 344 48 Chr 29 NC_032678.1 CM003049.1 52.13 44.4 970 - 10 74 723 90 Chr X NC_032679.1 CM003050.1 88.52 41.1 993 - 19 79 780 173 Chr Y NC_032680.1 CM003051.1 39.42 47.2 99 - - 12 208 104 MT NC_005971.1 - 0.02 39.4 13 2 22 - 37 - Chromosomes Click on chromosome name to open Genome Data Viewer