Pimephales promelas (ID 13167) - Genome - NCBI

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Pimephales promelas (fathead minnow)
Representative genome: Pimephales promelas (assembly EPA_FHM_2.0)
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ID: 13167

Organism Overview ; Genome Assembly and Annotation report [3] ; Organelle Annotation Report [1]

Pimephales promelas (fathead minnow)

Pimephales promelas overview

Lineage: Eukaryota[15557]; Metazoa[7782]; Chordata[3579]; Craniata[3544]; Vertebrata[3544]; Euteleostomi[3500]; Actinopterygii[1301]; Neopterygii[1292]; Teleostei[1289]; Ostariophysi[267]; Cypriniformes[129]; Leuciscidae[30]; Pogonichthyinae[5]; Pimephales[1]; Pimephales promelas[1]

Summary

Sequence data:

genome assemblies: 3

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 1066.43

median protein count: 48455

median GC%: 40

NCBI Annotation Release:

Publications (limited to 20 most recent records)

De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome. Martinson JW, et al. Environ Toxicol Chem 2022 Feb
The complete mitochondrial genome of Pimephales promelas (Cypriniformes: Cyprinidae). Liu S, et al. Mitochondrial DNA A DNA Mapp Seq Anal 2016 Sep

Representative (genome information for reference and representative genomes)

Reference genome:

Pimephales promelas EPA_FHM_2.0

Submitter: US EPA

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
		MT	NC_028087.1	-	0.02	42.9	13	2	22	-	37	-

	Un	-	.	-	1,066.41	40.0	48,442	2,716	2,200	6,141	36,658	533

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