Complete genomes: Polyomaviridae
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Viruses   Monodnaviria   Shotokuvirae   Cossaviricota   Papovaviricetes   Sepolyvirales  
  Polyomaviridae - 138 complete genomes Retrieve sequences:
Alphapolyomavirus  [51] Betapolyomavirus  [39] Deltapolyomavirus  [7] Epsilonpolyomavirus  [3]
Etapolyomavirus  [1] Gammapolyomavirus  [9] Thetapolyomavirus  [4] Zetapolyomavirus  [1]
unclassified Polyomaviridae  [23]
* The list view for each taxonomy node shows only the next level of sublineages.
* Unclassified/unassigned names are written in copper

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Genome Accession RefSeq type Source information Segm Length  Protein  Neighbors Host Created Updated
Go to the top of the page Alphapolyomavirus
    Alphapolyomavirus aflavicollis NC_055556 complete isolate:3349 - 5327 nt 9  2  vertebrates 06/01/2021 06/07/2021
    Alphapolyomavirus apaniscus NC_019853 complete isolate:1960 - 5273 nt 4  -  vertebrates 12/17/2012 08/13/2018
    Alphapolyomavirus callosciuri NC_055575 complete isolate:10239_CE449D - 5112 nt 4  2  vertebrates 06/01/2021 06/08/2021
    Alphapolyomavirus cardiodermae NC_020067 complete isolate:KY336 - 5372 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Alphapolyomavirus chlopygerythrus NC_019844 complete isolate:VMS96 - 5157 nt 4  -  vertebrates 12/13/2012 08/13/2018
    Alphapolyomavirus mauratus NC_001663 complete isolate:Berlin-Buch - 5372 nt 6  9  vertebrates 10/12/1988 08/13/2018
    Alphapolyomavirus quartipanos NC_019855 complete isolate:3161 - 5333 nt 6  -  vertebrates 12/17/2012 10/25/2019
    Alphapolyomavirus quintipanos NC_019856 complete isolate:3147 - 5349 nt 4  -  vertebrates 12/17/2012 10/25/2019
    Alphapolyomavirus secarplanirostris NC_038555 complete isolate:A1055 - 5019 nt 5  -  vertebrates 08/24/2018 08/24/2018
    Alphapolyomavirus septipanos NC_019858 complete isolate:6350 - 4970 nt 4  -  vertebrates 12/17/2012 10/25/2019
    Alphapolyomavirus sextipanos NC_019857 complete isolate:5743 - 4994 nt 4  -  vertebrates 12/17/2012 10/25/2019
    Alphapolyomavirus sturnirae NC_038557 complete isolate:B0454 - 5058 nt 4  -  vertebrates 08/24/2018 08/24/2018
    Alphapolyomavirus tertarplanisrostris NC_038556 complete isolate:A504 - 5187 nt 5  -  vertebrates 08/24/2018 08/24/2018
    Alphapolyomavirus tertichlopygerythrus NC_025898 complete isolate:VMS95/VMS97 - 5055 nt 5  -  vertebrates 12/11/2014 08/13/2018
    Alphapolyomavirus tertipanos NC_025370 complete isolate:6512 - 5309 nt 5  5  vertebrates 10/27/2014 08/13/2018
    Bat polyomavirus 5a NC_026768 complete isolate:5a - 5075 nt 4  -  vertebrates 04/04/2015 08/13/2018
    Bat polyomavirus 5b NC_038554 complete isolate:5b-2 - 5040 nt 4  -  vertebrates 08/24/2018 08/24/2018
    Bornean orang-utan polyomavirus NC_013439 complete isolate:Bo; sub-species:Bor - 5168 nt 5  -  vertebrates 10/08/2009 08/13/2018
    Chimpanzee polyomavirus Bob NC_014743 complete isolate:Bob - 5086 nt 5  2  vertebrates 12/01/2010 08/13/2018
    Eidolon polyomavirus 1 NC_020068 complete isolate:KY270 - 5294 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Gorilla gorilla gorilla polyomavirus 1 NC_025380 complete isolate:5766 - 5300 nt 5  -  vertebrates 10/27/2014 08/13/2018
    Human polyomavirus 12 NC_020890 complete strain:hu1403 - 5033 nt 5  -  04/02/2013 08/13/2018
    Human polyomavirus 9 NC_015150 complete isolate:HPyV9 - 5026 nt 5  5  human 03/25/2011 08/13/2018
    LI polyomavirus NC_034253 complete isolate:LIPyV - 5269 nt 5  -  human 04/05/2017 08/13/2018
    Macaca fascicularis polyomavirus 1 NC_019851 complete isolate:2085 - 5087 nt 4  -  vertebrates 12/17/2012 08/13/2018
    Mastomys natalensis polyomavirus 2 NC_055558 complete isolate:8173 R91 - 5322 nt 8  1  vertebrates 06/01/2021 06/07/2021
    Mastomys natalensis polyomavirus 3 NC_055595 complete isolate:9947 - 5338 nt 7  -  vertebrates 06/01/2021 06/08/2021
    Merkel cell polyomavirus NC_010277 complete isolate:R17b - 5387 nt 4  73  human 01/21/2008 08/13/2018
    Miniopterus schreibersii polyomavirus 1 NC_034220 complete strain:12SuB07 - 4752 nt 6  2  vertebrates 03/17/2017 08/13/2018
    Miniopterus schreibersii polyomavirus 2 NC_034221 complete strain:12SuB08 - 4877 nt 6  -  vertebrates 03/17/2017 08/13/2018
    Murine polyomavirus strain BG NC_001515 complete strain:BG - 5307 nt 6  5  vertebrates 08/02/1993 08/13/2018
    New Jersey polyomavirus-2013 NC_024118 complete isolate:NJ-PyV-2013 - 5108 nt 6  -  human 05/19/2014 08/13/2018
    Otomops polyomavirus KY156 NC_020066 complete isolate:KY156 - 4914 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Otomops polyomavirus KY157 NC_020071 complete isolate:KY157 - 5176 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Pan troglodytes verus polyomavirus 1a NC_025368 complete isolate:6444 - 5303 nt 5  -  vertebrates 10/27/2014 08/13/2018
    Philantomba monticola polyomavirus 1 NC_040705 complete isolate:9781 GN365 - 5034 nt 8  -  vertebrates 02/12/2019 09/12/2019
    Piliocolobus badius polyomavirus 2 NC_039051 complete isolate:5947 - 5148 nt 5  -  vertebrates 08/24/2018 08/24/2018
    Piliocolobus rufomitratus polyomavirus 1 NC_019850 complete isolate:4601 - 5140 nt 4  -  vertebrates 12/17/2012 10/25/2019
    Raccoon polyomavirus NC_023845 complete strain:R45 - 5016 nt 5  1  vertebrates 03/28/2014 08/13/2018
    Rattus norvegicus polyomavirus 1 NC_027531 complete isolate:3690 - 5318 nt 8  5  vertebrates 07/20/2015 08/13/2018
    Sorex araneus polyomavirus 1 NC_055162 complete isolate:GER_#4608_MU/06/0215/MV - 5095 nt 5  3  vertebrates 06/01/2021 06/07/2021
    Sorex coronatus polyomavirus 1 NC_055163 complete isolate:#7586_MU08/1013 - 5090 nt 5  3  vertebrates 06/01/2021 06/07/2021
    Sorex minutus polyomavirus 1 NC_055164 complete isolate:GER_#7607_MU10/2265 - 5096 nt 5  2  vertebrates 06/01/2021 06/07/2021
    Sumatran orang-utan polyomavirus NC_028127 complete isolate:Pi; sub-species:Sum - 5358 nt 5  -  vertebrates 10/08/2009 08/13/2018
    Sus scrofa polyomavirus 1 NC_040598 complete isolate:471 - 5068 nt 12  -  vertebrates 02/12/2019 09/12/2019
    Trichodysplasia spinulosa-associated polyomavirus NC_014361 complete - 5232 nt 5  23  human 08/05/2010 08/13/2018
    Tupaia glis polyomavirus 1 NC_040566 complete isolate:4373 Thai 87 - 5234 nt 9  2  vertebrates 02/12/2019 09/12/2019
    Yellow baboon polyomavirus 1 NC_025894 complete isolate:BS20 - 5064 nt 5  -  vertebrates 12/11/2014 08/13/2018
    bat polyomavirus 3b NC_028123 complete isolate:B1130 - 4903 nt 4  -  vertebrates 10/30/2015 11/07/2021
    bat polyomavirus 4b NC_028120 complete isolate:C1109 - 5352 nt 4  -  vertebrates 10/30/2015 11/07/2021
    bat polyomavirus 5b1 NC_026767 complete isolate:5b-1 - 5047 nt 4  -  vertebrates 04/04/2015 08/02/2020
Go to the top of the page Betapolyomavirus
    African elephant polyomavirus 1 NC_022519 complete isolate:DK-1/2011 - 5722 nt 5  -  vertebrates 09/30/2013 08/13/2018
    Bank vole polyomavirus NC_028117 complete isolate:KS/14/281 - 5032 nt 5  4  vertebrates 10/30/2015 08/13/2018
    Bat polyomavirus 6a NC_026762 complete isolate:6a - 5019 nt 4  -  vertebrates 04/06/2015 08/13/2018
    Bat polyomavirus 6b NC_026770 complete isolate:6b - 5039 nt 4  -  vertebrates 04/04/2015 08/13/2018
    Bat polyomavirus 6c NC_026769 complete isolate:6c - 5046 nt 4  -  vertebrates 04/04/2015 08/13/2018
    Betapolyomavirus arplanirostris NC_038558 complete isolate:R104 - 5371 nt 4  -  vertebrates 08/24/2018 08/24/2018
    Betapolyomavirus calbifrons NC_019854 complete isolate:2141 - 5013 nt 4  -  vertebrates 12/17/2012 08/13/2018
    Betapolyomavirus callosciuri NC_055578 complete isolate:10295_BH122/15 - 5464 nt 6  2  vertebrates 06/01/2021 06/08/2021
    Betapolyomavirus canis NC_034456 complete serotype:DogPyV-1; isolate:R006926 CT2015 - 5070 nt 6  -  vertebrates 05/05/2017 08/25/2018
    Betapolyomavirus cercopitheci NC_025892 complete isolate:4077 - 5189 nt 5  -  vertebrates 12/11/2014 10/25/2019
    Betapolyomavirus equi NC_017982 complete isolate:CU03 - 4987 nt 5  -  vertebrates 05/31/2012 08/13/2018
    Betapolyomavirus hominis NC_001538 complete - 5153 nt 6  490  human, vertebrates 11/03/1982 08/13/2018
    Betapolyomavirus lepweddellii NC_032120 complete isolate:WSK37 - 5186 nt 7  -  vertebrates 12/16/2016 08/13/2018
    Betapolyomavirus macacae NC_001669 complete - 5243 nt 7  34  human, vertebrates 08/03/1993 06/04/2019
    Betapolyomavirus mafricanus NC_020069 complete isolate:KY369 - 5213 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Betapolyomavirus mastomysis NC_025895 complete isolate:NR55 - 4899 nt 6  -  vertebrates 12/11/2014 08/13/2018
    Betapolyomavirus ptedavyi NC_020070 complete isolate:GTM203 - 5136 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Betapolyomavirus secuchlopygerythrus NC_025896 complete isolate:VMK96 - 5167 nt 6  -  vertebrates 12/11/2014 08/13/2018
    Betapolyomavirus secumuris NC_001505 complete strain:Kilham - 4754 nt 5  3  vertebrates 08/02/1993 08/13/2018
    Betapolyomavirus securanorvegicus NC_032005 complete serotype:RatPyV-2; isolate:1014-2016-2 - 5108 nt 6  -  vertebrates 12/06/2016 08/13/2018
    Betapolyomavirus tertihominis NC_009238 complete isolate:Stockholm 60 - 5040 nt 5  11  human 03/30/2007 08/13/2018
    Betapolyomavirus vicugnae NC_034251 complete isolate:UCD1 - 5052 nt 5  -  vertebrates 04/05/2017 08/13/2018
    California sea lion polyomavirus 1 NC_013796 complete strain:CSL6994 - 5112 nt 6  -  vertebrates 02/11/2010 08/13/2018
    Common vole polyomavirus NC_028119 complete isolate:KS13/0947 - 5024 nt 5  1  vertebrates 10/30/2015 08/13/2018
    Glis glis polyomavirus 1 NC_040821 complete isolate:3327 ID3a - 5338 nt 6  -  vertebrates 02/12/2019 09/12/2019
    JC polyomavirus NC_001699 complete strain:Mad1 - 5130 nt 6  691  human 08/02/1993 08/13/2018
    Meles meles polyomavirus 1 NC_026473 complete isolate:French - 5187 nt 5  1  vertebrates 02/17/2015 08/13/2018
    Mus musculus polyomavirus 3 NC_055488 complete isolate:MPoV3/NYC/2015/K003/3347 - 5091 nt 5  -  vertebrates 06/01/2021 06/07/2021
    Myotis polyomavirus VM-2008 NC_011310 complete isolate:14 - 5081 nt 6  -  09/30/2008 08/13/2018
    Pan troglodytes verus polyomavirus 8 NC_028635 complete isolate:Ch-Regina - 5163 nt 6  1  vertebrates 12/08/2015 08/13/2018
    Panthera leo polyomavirus 1 NC_040822 complete isolate:3884 - 5018 nt 11  1  vertebrates 02/12/2019 09/12/2019
    Rousettus aegyptiacus polyomavirus 1 NC_034219 complete strain:12SuB01 - 5014 nt 6  -  vertebrates 03/17/2017 08/13/2018
    Saimiri sciureus polyomavirus 1 NC_038559 complete isolate:2033 - 5067 nt 5  -  vertebrates 08/24/2018 06/04/2019
    Sciurus carolinensis polyomavirus 1 NC_055576 complete isolate:9804_KS15/0573 - 5236 nt 6  2  vertebrates 06/01/2021 06/08/2021
    Squirrel monkey polyomavirus NC_009951 complete isolate:Squi0106 - 5075 nt 6  3  vertebrates 10/30/2007 08/13/2018
    WU Polyomavirus NC_009539 complete strain:B0 - 5229 nt 5  152  human 06/07/2007 08/13/2018
    Yellow baboon polyomavirus 2 NC_025897 complete isolate:BS94/BK94 - 5181 nt 6  1  vertebrates 12/11/2014 02/28/2020
    bat polyomavirus 2a NC_028122 complete isolate:AT7 - 5201 nt 5  -  vertebrates 10/30/2015 09/13/2020
    bat polyomavirus 2b NC_028121 complete isolate:R266 - 5041 nt 5  -  vertebrates 10/30/2015 09/13/2020
Go to the top of the page Deltapolyomavirus
    Deltapolyomavirus canis NC_055559 complete isolate:8472 - 5215 nt 6  1  vertebrates 06/01/2021 06/07/2021
    Giant panda polyomavirus NC_035181 complete isolate:GPPyV1 - 5144 nt 5  -  vertebrates 07/14/2017 08/13/2018
    Human polyomavirus 6 NC_014406 complete isolate:607a - 4926 nt 5  17  human 08/16/2010 08/13/2018
    Human polyomavirus 7 NC_014407 complete isolate:713a - 4952 nt 5  15  human 08/16/2010 08/13/2018
    MW polyomavirus NC_018102 complete strain:MA095 - 4927 nt 5  21  human 07/05/2012 08/13/2018
    Raccoon-associated polyomavirus 2 NC_034378 complete isolate:Rac2 - 5225 nt 7  -  vertebrates 04/21/2017 08/13/2018
    STL polyomavirus NC_020106 complete strain:MA138 - 4776 nt 6  6  human 01/11/2013 08/13/2018
Go to the top of the page Epsilonpolyomavirus
    Capra aegagrus polyomavirus 1 NC_055557 complete isolate:7515 C-008-11-3B - 4700 nt 6  1  vertebrates 06/01/2021 06/07/2021
    Epsilonpolyomavirus bovis NC_001442 complete - 4697 nt 6  6  vertebrates 04/29/1993 08/13/2018
    Potamochoerus porcus polyomavirus 1 NC_040634 complete isolate:9780 PI225 - 4825 nt 7  -  vertebrates 02/12/2019 09/12/2019
Go to the top of the page Etapolyomavirus
    Rhynchobatus djiddensis polyomavirus 1 NC_026244 complete isolate:UGA1 - 3962 nt 4  -  vertebrates 01/23/2015 08/13/2018
Go to the top of the page Gammapolyomavirus
    Adelie penguin polyomavirus NC_026141 complete isolate:AdPyV_Crozier_2012 - 4988 nt 5  -  vertebrates 01/12/2015 08/13/2018
    Budgerigar fledgling disease virus - 1 NC_004764 complete - 4981 nt 9  35  vertebrates 05/02/2003 08/13/2018
    Butcherbird polyomavirus NC_023008 complete isolate:AWH19840 - 5084 nt 6  -  vertebrates 12/09/2013 08/13/2018
    Canary polyomavirus NC_017085 complete isolate:CaPyV-Ha09 - 5421 nt 5  5  vertebrates 07/10/2012 08/13/2018
    Crow polyomavirus NC_007922 complete - 5079 nt 6  -  vertebrates 03/24/2006 08/13/2018
    Erythrura gouldiae polyomavirus 1 NC_039052 complete strain:1209 - 5172 nt 6  -  vertebrates 08/24/2018 08/24/2018
    Finch polyomavirus NC_007923 complete - 5278 nt 6  4  vertebrates 03/24/2006 08/13/2018
    Gammapolyomavirus lonmaja NC_039053 complete strain:14534/2011 - 5284 nt 6  -  vertebrates 08/24/2018 08/24/2018
    Goose hemorrhagic polyomavirus NC_004800 complete isolate:Germany 2001 - 5256 nt 6  35  vertebrates 05/10/2003 08/13/2018
Go to the top of the page Thetapolyomavirus
    Black sea bass polyomavirus 1 NC_025790 complete isolate:2835 - 7369 nt 5  -  vertebrates 12/01/2014 08/13/2018
    Sparus aurata polyomavirus 1 NC_030838 complete isolate:SA9poly - 7299 nt 5  -  vertebrates 08/29/2016 08/13/2018
    Thetapolyomavirus trebernacchii NC_040638 complete isolate:BIS330 - 5541 nt 3  -  vertebrates 02/12/2019 09/12/2019
    Thetapolyomavirus trepennellii NC_026944 complete isolate:PES6 - 6219 nt 4  -  vertebrates 05/05/2015 08/13/2018
Go to the top of the page Zetapolyomavirus
    Zetapolyomavirus delphini NC_025899 complete isolate:DPyV-1/Trachea/2010 - 5159 nt 5  -  vertebrates 12/11/2014 08/13/2018
Go to the top of the page unclassified Polyomaviridae
    African green monkey polyomavirus NC_004763 complete - 5270 nt 5  1  vertebrates 05/02/2003 08/13/2018
    Akodon montensis polyomavirus NC_040715 complete isolate:1b - 6052 nt 5  -  vertebrates 02/12/2019 09/12/2019
    Bat polyomavirus NC_040600 complete isolate:KSA403 - 4696 nt 3  2  vertebrates 02/12/2019 09/12/2019
    Bat polyomavirus 6d NC_026766 complete isolate:6d-1 - 4956 nt 4  1  vertebrates 04/04/2015 08/13/2018
    Bovine polyomavirus 2 NC_025811 complete strain:BPyV2-SF - 5085 nt 6  5  vertebrates 12/05/2014 08/13/2018
    Bovine polyomavirus 3 NC_025800 complete isolate:3S5 - 4861 nt 5  -  vertebrates 12/04/2014 08/13/2018
    Chaerephon polyomavirus 1 NC_020065 complete isolate:KY397 - 4899 nt 5  -  vertebrates 01/03/2013 08/13/2018
    Marbled eel polyomavirus NC_030148 complete isolate:AMV-1 - 14334 nt 16  1  vertebrates 05/16/2016 08/13/2018
    Myocastor coypus polyomavirus 1 NC_040573 complete strain:BR - 5422 nt 5  -  vertebrates 02/12/2019 09/12/2019
    Pan troglodytes troglodytes polyomavirus 1 NC_027532 complete isolate:F514.1 - 5159 nt 6  -  vertebrates 07/20/2015 08/13/2018
    Polyomavirus sp. NC_031757 complete isolate:poly-CA1 - 4564 nt 4  2  vertebrates 11/04/2016 08/13/2018
    Pomona leaf-nosed bat associated polyomavirus NC_033737 complete - 4676 nt 5  -  01/20/2017 08/13/2018
    Porcine polyomavirus NC_040714 complete strain:180230 - 4978 nt 4  4  vertebrates 02/12/2019 09/12/2019
    Rhinolophus blasii polyomavirus 2 NC_040538 complete strain:SUB13#14 - 5215 nt 6  -  vertebrates 02/12/2019 09/12/2019
    Rhinolophus hildebrandtii polyomavirus 1 NC_034218 complete strain:12SuB17 - 5060 nt 6  -  vertebrates 03/17/2017 08/13/2018
    Rhinolophus simulator polyomavirus 1 NC_040607 complete strain:SUB13#17 - 5249 nt 6  -  vertebrates 02/12/2019 09/12/2019
    Rhinolophus simulator polyomavirus 2 NC_040676 complete strain:SUB13#23 - 5016 nt 6  -  vertebrates 02/12/2019 09/12/2019
    Rhinolophus simulator polyomavirus 3 NC_040677 complete strain:SUB13#25 - 5082 nt 6  -  vertebrates 02/12/2019 09/12/2019
    Sea otter polyomavirus 1 NC_025259 complete isolate:6831-13 - 5145 nt 6  -  vertebrates 10/16/2014 08/13/2018
    Sheep polyomavirus 1 NC_026942 complete isolate:VH4-S14 - 5132 nt 7  -  vertebrates 05/03/2015 08/13/2018
    Simian virus 12 NC_007611 complete strain:SA12 - 5230 nt 6  1  vertebrates 11/18/2005 08/13/2018
    Tadarida brasiliensis polyomavirus 1 NC_026012 complete - 4882 nt 5  -  vertebrates 01/07/2015 08/13/2018
    Tadarida brasiliensis polyomavirus 2 NC_026015 complete - 4893 nt 5  -  vertebrates 01/07/2015 08/13/2018
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