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44 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter			Klebsiella pneumoniae
GSE264574	Understanding resistance to polymyxin and amikacin in Klebsiella pneumoniae	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	CSV	Camila Maurmann de Souza	Apr 26, 2024
GSE249468	Intestinal carbapenem-resistant Klebsiella pneumoniae undergoes complex transcriptional reprogramming following immune activation	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	23	TXT	Clément David	Dec 07, 2023
GSE224709	Next Generation Sequencing Facilitates Quantitative Analysis of Klebsiella pneumoniae strain HKE9, HKE9-M-rpoS,HKE9-C-M-ropS	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	9	TXT	Bei Han	Nov 15, 2023
GSE212413	Differential gene expression between Kp209_CSTR and Kp209 by RNA-seq	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	XLSX	Manon Janet-Maitre	Jul 25, 2023
GSE237136	Systematic interrogation of CRISPR-based antimicrobials in Klebsiella pneumoniae reveals nuclease-, guide-, and strain-specific factors influencing antimicrobial activity	Expression profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae	20	TSV	David Bikard	Jul 17, 2023
GSE233610	Use of a combined antibacterial synergy approach and the ANNOgesic tool to identify novel targets within the gene networks of multidrug-resistant Klebsiella pneumoniae	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	4	TXT	Dongeun Yong	Jul 01, 2023
GSE229867	Transcriptome analyses reveal antibiotic-resistant pathways in Klebsiella pneumonia	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	TXT	Guo qing Liu	Apr 18, 2023
GSE180237	Bacterial droplet-based single-cell RNA-seq reveals antibiotic-associated heterogeneous cellular states	Expression profiling by high throughput sequencing	Enterococcus faecalis Escherichia coli Klebsiella pneumoniae Pseudomonas aeruginosa	35	TSV TXT SRA Run Selector	Peijun Ma	Jan 27, 2023
GSE217148	Genomic and Transcriptional Characterisation of Carbapenem and Colistin Resistance Mechanisms in Klebsiella pneumoniae	Expression profiling by high throughput sequencing Other	Acinetobacter baumannii Enterobacter asburiae Enterobacter bugandensis Enterobacter cloacae Enterobacter cloacae complex sp. R_G8 Klebsiella pneumoniae	22	CSV DIFF GFF PDF	John Osei Sekyere	Nov 07, 2022
GSE201383	Subinhibitory Concentrations of Antibiotics Alter the Response of Klebsiella pneumoniae to Components of Innate Host Defense	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	18	TXT	Dan Sturdevant	Oct 12, 2022
GSE208573	Molecular Epidemiology of Enterobacterales Resistant to Antibiotics of Last Resort in Pregnant Women in Labour at a Tertiary Hospital	Methylation profiling by high throughput sequencing Other	Enterobacter cloacae Enterobacter roggenkampii Klebsiella pneumoniae	5	GFF XLSX	John Osei Sekyere	Jul 20, 2022
GSE199079	Integrated multi-omics reveals putative biomarkers of bacterial-fungal co-infections	Expression profiling by high throughput sequencing	Aspergillus fumigatus Klebsiella pneumoniae	9	XLSX	Sabrina Jenull	Mar 24, 2022
GSE123964	Dual RNA-seq on Klebsiella pneumoniae infection to human epithelial cells	Expression profiling by high throughput sequencing	Homo sapiens Klebsiella pneumoniae	5	TXT SRA Run Selector	Rieza Aprianto	Dec 14, 2021
GSE182766	Inappropriate use of antibiotics exacerbates inflammation through OMVs-induced pyroptosis in multidrug-resistant Klebsiella pneumoniae infection	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	TXT SRA Run Selector	Yanbing Ma	Aug 28, 2021
GSE182079	A chromatin immunoprecipitation database for prokarytic organisms	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Escherichia coli K-12 Klebsiella pneumoniae Pseudomonas putida Salmonella enterica Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Shigella flexneri Staphylococcus aureus Yersinia pseudotuberculosis	102	GFF	Ye Gao	Aug 17, 2021
GSE181770	A chromatin immunoprecipitation database for prokarytic organisms [fur]	Genome binding/occupancy profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae Salmonella enterica Shigella flexneri Yersinia pseudotuberculosis	14	GFF SRA Run Selector	Ye Gao	Aug 15, 2021
GSE152843	Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae KPC2	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	12	GFF GTF TXT SRA Run Selector	Antibiotic Resistant Sepsis Pathogens Framework Initiative Bioplatforms Australia	Jul 01, 2021
GSE152844	Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative - Klebsiella pneumoniae AJ218	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	12	GFF GTF TXT SRA Run Selector	Antibiotic Resistant Sepsis Pathogens Framework Initiative Bioplatforms Australia	Jul 01, 2021
GSE152848	Bioplatforms Australia: Antibiotic Resistant Sepsis Pathogens Framework Initiative	Expression profiling by high throughput sequencing	Escherichia coli Klebsiella pneumoniae Klebsiella variicola Staphylococcus aureus Streptococcus pneumoniae Streptococcus pyogenes	329		Antibiotic Resistant Sepsis Pathogens Framework Initiative Bioplatforms Australia	Jul 01, 2021
GSE146844	Analysis of the oxidative stress regulon identifies soxS as a genetic target for resistance reversal in multi-drug resistant Klebsiella pneumoniae	Expression profiling by high throughput sequencing	Klebsiella pneumoniae	6	TXT SRA Run Selector	Sathesh K Sivasankaran	May 26, 2021