GEO Browser - GEO

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301 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					VCF
GSE246610	Conditionally Replicative Adenovirus as a Therapy for Malignant Peripheral Nerve Sheath Tumors	Expression profiling by high throughput sequencing Other	Mus musculus	51	TXT VCF	David Largaespada	Apr 24, 2024
GSE255233	RNA-Seq, WGS, WXS of mouse myeloma tumors derived from Vk*MYC transgenic mice	Expression profiling by high throughput sequencing Other	Mus musculus	195	TXT VCF	Peter Leif Bergsagel	Apr 04, 2024
GSE263567	Brd4::Nutm1 fusion gene initiates NUT carcinoma in vivo [WGS]	Genome variation profiling by high throughput sequencing	Mus musculus	4	VCF	Bin Gu	May 07, 2024
GSE135007	Giant island mice exhibit widespread gene regulatory evolution in key metabolic organs	Expression profiling by high throughput sequencing	Mus musculus domesticus	100	TXT VCF SRA Run Selector	Colin Dewey	Sep 18, 2020
GSE103276	Reprogramming the endogenous type III-A CRISPR-Cas system for genome editing and RNA interference in Mycobacterium tuberculosis	Other	Mycobacterium tuberculosis H37Ra	3	VCF SRA Run Selector	Weize Xu	Aug 30, 2020
GSE98911	Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora.	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Methylation profiling by high throughput sequencing Non-coding RNA profiling by high throughput sequencing	Neurospora crassa	19	FASTA IGV TDF TXT VCF WIG SRA Run Selector	Andrew David Klocko	Jan 16, 2019
GSE185495	Comprehensive evaluation of adenine base editors induced mutations at genomic and transcriptional level [WGS]	Other Genome variation profiling by high throughput sequencing	Oryza sativa	71	VCF SRA Run Selector	shaofang Li	Jan 01, 2022
GSE185496	Comprehensive evaluation of adenine base editors induced mutations at genomic and transcriptional level [transcriptome]	Expression profiling by high throughput sequencing	Oryza sativa	34	VCF WIG SRA Run Selector	shaofang Li	Jan 01, 2022
GSE185497	Comprehensive evaluation of adenine base editors induced mutations at genomic and transcriptional level	Other Genome variation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Oryza sativa	105	VCF WIG	shaofang Li	Jan 01, 2022
GSE160188	Do Copper enhance antibiotic resistance (AR) in resistant bacteria and/or induce AR in sensitive bacteria? [DNA-seq]	Genome variation profiling by high throughput sequencing	Pseudomonas aeruginosa	60	VCF SRA Run Selector	James Breen	Oct 28, 2020
GSE58390	Pseudomonas aeruginosa Ceftolozane-Tazobactam Resistance Development Requires Multiple Mutations Leading to Overexpression and Structural Modification of AmpC.	Expression profiling by high throughput sequencing	Pseudomonas aeruginosa PAO1	16	TXT VCF SRA Run Selector	Denitsa Eckweiler	Jun 12, 2014
GSE159202	Resistance to the herbicide 2,4-D in Sisymbrium orientale conferred by a deletion mutation in the degron tail of IAA2	Expression profiling by high throughput sequencing	Sisymbrium orientale	12	FASTA VCF XLSX SRA Run Selector	Todd Gaines	Oct 08, 2020
GSE200034	Next Generation Sequencing of tomato germplasm for cold tolerance and yield studies	Genome variation profiling by high throughput sequencing	Solanum chilense Solanum habrochaites Solanum lycopersicum Solanum lycopersicum var. cerasiforme Solanum peruvianum Solanum pimpinellifolium	50	VCF	Basharat Ahmad Bhat	Apr 01, 2023
GSE113318	Systems genomics study reveals expression quantitative trait loci, regulator genes and pathways associated with boar taint in pigs (SNP60v2 BeadChip data set)	Genome variation profiling by SNP array	Sus scrofa	48	CSV IDAT TXT VCF	Haja N Kadarmideen	Apr 18, 2018
GSE157688	Genome-wide single nucleotide polymorphism array and whole-genome sequencing reveal the inbreeding progression of Banna minipig inbred line [Seq]	Genome variation profiling by high throughput sequencing	Sus scrofa	1	VCF SRA Run Selector	Jinlong Huo	Dec 31, 2020
GSE157935	Genome-wide single nucleotide polymorphism array and whole-genome sequencing reveal the inbreeding progression of Banna minipig inbred line	Genome variation profiling by high throughput sequencing Genome variation profiling by SNP array SNP genotyping by SNP array	Sus scrofa	49	IDAT VCF	Jinlong Huo	Dec 31, 2020
GSE184912	Multi-omics approaches for comprehensive analysis and understanding to immune response in miniature pig breed	Expression profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Sus scrofa	16	TXT VCF SRA Run Selector	Devender Arora	Feb 06, 2022
GSE152639	Structure of DNA methyltransferases DNMT3A/DNMT3B bound to a nucleosome [seq]	Methylation profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing	synthetic construct	20	BW FA VCF SRA Run Selector	Peter A Jones	Jun 17, 2020
GSE74470	Transcriptomic Insights into Genetic Diversity of Protein-Coding Genes in X. laevis	Expression profiling by high throughput sequencing	Xenopus laevis	3	TSV TXT VCF SRA Run Selector	Leonid Peshkin	Mar 15, 2017
GSE234920	Teosinte Pollen Drive guides maize domestication and evolution by RNA interference [dna_single_pollen]	Other	Zea mays subsp. mays x Zea mays subsp. mexicana	377	VCF	Robert A Martienssen	Jul 26, 2023