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301 series

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Accession	Title	Series type(s)	Organism(s)	Samples	Supplementary	Contact	Release date
Filter					VCF
GSE197130	Allele-specific aberration of imprinted domain chromosome architecture associates with large offspring syndrome	Other Genome variation profiling by high throughput sequencing Methylation profiling by high throughput sequencing	Bos indicus Bos indicus x Bos taurus	50	BEDGRAPH VCF	Rocío Melissa Rivera	Apr 22, 2022
GSE146345	Whole genome sequencing of two Holstein cattle	Genome variation profiling by high throughput sequencing	Bos taurus	2	VCF SRA Run Selector	George E. Liu	May 01, 2020
GSE166712	A knockout mutation associated with juvenile paroxysmal dyskinesia in Markiesje dogs indicates SOD1 pleiotropy	Genome variation profiling by high throughput sequencing	Canis lupus familiaris	5	VCF SRA Run Selector	Frank van Steenbeek	Mar 12, 2021
GSE116595	Mutation analysis of parental and 10 avirulent C. rodentium isolates from the feces of C3H/HeJ mice	Other	Citrobacter rodentium	11	FASTA VCF SRA Run Selector	April Elizabeth Williams	Sep 21, 2018
GSE116597	Dietary iron drives conversion of an enteric pathogen to commensalism via host metabolic alteration	Expression profiling by high throughput sequencing Other	Citrobacter rodentium Mus musculus	20	FASTA VCF	April Elizabeth Williams	Sep 21, 2018
GSE205747	An intact S-layer is advantageous to Clostridioides difficile within the host.	Expression profiling by high throughput sequencing	Clostridioides difficile	28	CSV VCF	John Joseph Cole	Jun 10, 2023
GSE206253	Methyl-SNP-seq reveals dual readouts of methylome and variome at molecule resolution	Other	Clostridium acetobutylicum Escherichia coli Homo sapiens	9	COV VCF	Bo Yan	Jun 19, 2022
GSE166350	Epigenetic variability among saffron crocus (Crocus sativus L.) accessions characterised by different phenotypes	Genome variation profiling by high throughput sequencing	Crocus sativus	5	VCF SRA Run Selector	Marcello Del Corvo	Mar 24, 2021
GSE85554	Characterization of genetic loss-of-function of Fus in zebrafish	Expression profiling by high throughput sequencing	Danio rerio	9	TXT VCF SRA Run Selector	Helen May-Simera	Dec 01, 2016
GSE138920	Dynamic Properties of the Reissner Fiber and Implications on Scoliosis II	Other	Danio rerio	4	VCF SRA Run Selector	Bo Zhang	Oct 14, 2020
GSE227754	DNA methylation profiling of zebrafish DNMT3aa and DNMT3ab mutants	Expression profiling by high throughput sequencing	Danio rerio	20	VCF	Neelakanteswar Aluru	Jun 30, 2023
GSE103939	DNA methylation profiling of Daphnia species.	Methylation profiling by high throughput sequencing Expression profiling by high throughput sequencing	Daphnia magna Daphnia pulex	41	TXT VCF SRA Run Selector	Jouni Antero Kvist	Dec 11, 2018
GSE69013	Active chromatin and transcription play a key role in chromosome partitioning into topologiсally associating domains	Expression profiling by high throughput sequencing Other	Drosophila melanogaster	20	TXT VCF SRA Run Selector	Ekaterina Khrameeva	Oct 26, 2015
GSE161335	Translesion DNA synthesis-driven mutagenesis in very early embryogenesis of fast cleaving embryos	Genome variation profiling by high throughput sequencing	Drosophila melanogaster	4	CSV JSON VCF SRA Run Selector	Domenico Maiorano	Dec 28, 2021
GSE222193	Transient loss of Polycomb components induces an epigenetic cancer fate	Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing Genome variation profiling by high throughput sequencing	Drosophila melanogaster	126	BROADPEAK BW NARROWPEAK TXT VCF	Vincent Loubiere	Feb 28, 2024
GSE227867	Effect of SERT LOF on Drosophila Kenyon Cell subtypes postsynaptic to serotonin [scRNA-seq]	Expression profiling by high throughput sequencing	Drosophila melanogaster	3	CSV MTX RDS TSV VCF	Shivan Luca Bonanno	Jun 26, 2023
GSE131764	Axiom Genome-Wide Chicken Array of Broiler Chickens	Genome variation profiling by SNP array	Gallus gallus	96	CEL VCF	Behnam Abasht	May 25, 2019
GSE212418	RNA sequences amplified from a HBV-genome-encoding plasmid	Other	Hepatitis B virus blank sample	42	VCF	Jitao David Zhang	Sep 17, 2022
GSE52194	mRNA-sequencing of breast cancer subtypes and normal tissue	Expression profiling by high throughput sequencing	Homo sapiens	20	GTF VCF SRA Run Selector	Anelia Horvath	Nov 08, 2013
GSE52457	Global Reorganization of Chromatin Architecture during Embronic Stem Cell Differentiation	Genome binding/occupancy profiling by high throughput sequencing Other	Homo sapiens	27	BEDGRAPH VCF XLS SRA Run Selector	Jesse R Dixon	Feb 18, 2015