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Status
Public on Apr 14, 2010
Title
NIAID Cgda -- Candida glabrata 6K - mAdb version
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Nakaseomyces glabratus CBS 138 Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
The array probes were designed against all NCBI RefSeq mRNA sequences available for Candida glabrata CBS138 as of September 2008. Length 60-base DNA sequences were selected using the e-Array software (Agilent Technologies) specifying one “best probe” per transcript and “3-prime bias”. Custom microarrays with 5,125 unique probes (one for each target transcript), replicated to eight spot features per probe, were manufactured by Agilent in the 4x44K format.
Contributor(s)
Myers TG Submission date
Apr 14, 2010
Last update date
Apr 14, 2010
Contact name
Timothy G Myers
E-mail(s)
tgm@nih.gov Organization name
National Institute of Allergy and Infectious Diseases
Department
Research Technologies Branch
Lab
Genomic Technologies Section
Street address
50 South Drive, Room 5509
City
Bethesda
State/province
MD
ZIP/Postal code
20892-8005
Country
USA
Samples (24)
GSM533631 , GSM533632 , GSM533633 , GSM533634 , GSM533635 , GSM533636
GSM533637 ,
GSM533638 ,
GSM655054 ,
GSM655055 ,
GSM655056 ,
GSM655057 ,
GSM655058 ,
GSM655059 ,
GSM655060 ,
GSM655061 ,
GSM910258 ,
GSM910259 ,
GSM910260 ,
GSM910261 ,
GSM910262 ,
GSM910263 ,
GSM910264 ,
GSM910265 Series (4)
GSE21355 Azole Resistance Mechanism in Candida glabrata
GSE26612 [URE3] Prion formation by the Candida albicans Ure2p (but not by C. glabrata Ure2p)-CgUre2
GSE26620 [URE3] Prion formation by the Candida albicans Ure2p (but not by C. glabrata Ure2p)
GSE37071 The Candida glabrata transcription factor Stb5p is a negative regulator of ATP-binding cassette transporters
Data table header descriptions ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for oligo sample
OLIGO_ID Oligo identifier
GENE Gene Name
DESCRIPTION Gene Description
GB_ACC GenBank Accession number
SEQUENCE Sequence of the oligo sample
SPOT_ID
Data table ID MADB_WELL_ID OLIGO_ID GENE DESCRIPTION GB_ACC SEQUENCE SPOT_ID 7250276_1
7250276
GE_BrightCorner
Control
Control
7250281_1
7250281
DarkCorner
Control
Control
7250281_2
7250281
DarkCorner
Control
Control
7250281_3
7250281
DarkCorner
Control
Control
7250281_4
7250281
DarkCorner
Control
Control
7250281_5
7250281
DarkCorner
Control
Control
7250281_6
7250281
DarkCorner
Control
Control
7250281_7
7250281
DarkCorner
Control
Control
7250281_8
7250281
DarkCorner
Control
Control
7250281_9
7250281
DarkCorner
Control
Control
7250281_10
7250281
DarkCorner
Control
Control
7254347_1
7254347
AE8110401991
CAGL0G06710g predicted mRNA. unnamed protein product; no similarity, hypothetical start
XM_446652 ACCCCACACGTACGAAGTTGGGGTTTTCTGTCGTTCTTGCATGGTGTAATATCTTGCTAA
7253606_1
7253606
AE8110401250
CAGL0E04246g predicted mRNA. unnamed protein product; similar to sp-Q03705 Saccharomyces cerevisiae YML036w, start by similarity
XM_445872 AACTCTACCGAAGACCAGGTATCCTCTATGATTGTCAATATGATTCAACTACGTGGATTA
7253041_1
7253041
AE8110400685
CAGL0C02013g predicted mRNA. unnamed protein product; weakly similar to sp-P38152 Saccharomyces cerevisiae YBR291c CTP1, hypothetical start
XM_445263 GGTATATACCAGTACACTGAAAACATGATTGCACTTATGAGACAGGAAAGATACCTCGAA
7252880_1
7252880
AE8110400524
CAGL0B02882g predicted mRNA. unnamed protein product; weakly similar to DEHA0A06369g Debaryomyces hansenii and CA4539-CaIFQ4 Candida albicans, hypothetical start
XM_445097 CAAAATGCGTATGCTCACATTTGAGAGAACACTGCGACAAGTATGGAGCAGAACGAGTTC
7254384_1
7254384
AE8110402028
CAGL0G07557g predicted mRNA. unnamed protein product; similar to tr-Q08747 Saccharomyces cerevisiae YOR295w, hypothetical start
XM_446690 AGTGAGCAAGAACATGCAGATAGCACTGATACCAGCGACTCAGTTTACTACTCTACATGA
7256367_1
7256367
AE8110404011
CAGL0K13024g predicted mRNA. unnamed protein product; some similarities with sp-P08640 Saccharomyces cerevisiae YIR019c STA1, hypothetical start
XM_448783 CTGCATCAACCCTGAAGCAAACAAAGTTCTGTGTCACTATAGTTTTGACAATTTTAATGA
7256808_1
7256808
AE8110404452
CAGL0L11088g predicted mRNA. unnamed protein product; highly similar to tr-Q12040 Saccharomyces cerevisiae YOR283w, start by similarity
XM_449250 GGTAACACTCAACATTTGGGTGATGGGGAATTTATTGTCAGTGATTTGCGTCTACGCTAA
7257135_1
7257135
AE8110404779
CAGL0M05797g predicted mRNA. unnamed protein product; similar to sp-P53167 Saccharomyces cerevisiae YGL063w PUS2 pseudouridine synthase 2, hypothetical start
XM_449598 CAAAAGCATGGAACTCTTAGAAACTGTAGATCCCGATCTTACATCAGCGACTGCCTTAGA
7255728_1
7255728
AE8110403372
CAGL0J09152g predicted mRNA. unnamed protein product; highly similar to sp-Q12434 Saccharomyces cerevisiae YDL135c RDI1, start by similarity
XM_448107 ATTGATGATGACAAAACAACTCATCTAACTTTGAACTGGGGTGTCGAAATTGTGAAGAAA
45220 10270 Kbytes .Supplementary data files not provided
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