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Platform GPL10369 Query DataSets for GPL10369
Status Public on May 05, 2010
Title Affymetrix GeneChip Mouse Genome 430 2.0 Array [CDF: Mm_Unigene_10]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol This is identical to GPL1261 but a custom cdf environment was used to extract data. The custom CDF (Mm_Unigene_10) can be found at the Web link below and also as a supplementary file at the foot of the record.
Description CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan.
After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files.
A probe must hit only one genomic location.
Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set;
Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon;
Web link
Contributor(s) Hirner S, Nakaya HI
Submission date Apr 29, 2010
Last update date May 05, 2010
Contact name Helder I. Nakaya
Phone +551126481130
Organization name Universidade de São Paulo
Street address AVENIDA PROFESSOR LINEU PRESTES, 580, Block 17
State/province SÃO PAULO
ZIP/Postal code 05508000
Country Brazil
Samples (8) GSM539334, GSM539335, GSM539336, GSM539337, GSM539338, GSM539339 
Series (1)
GSE21602 Microarray analyses of lymph node dendritic cells (DCs) stimulated in vitro with papain or LPS
Alternative to GPL1261 (Alternative CDF [official])

Data table header descriptions
AffyID Affymetrix ID
UniGeneID Unigene ID
GeneName Gene Name
GeneSymbol Gene Symbol
EntrezID Gene ID
ORF Entrez Gene ID

Data table
ID AffyID UniGeneID GeneName GeneSymbol EntrezID ORF SPOT_ID
1 AFFX-18SRNAMur/X00686_3_at Control
2 AFFX-18SRNAMur/X00686_5_at Control
3 AFFX-18SRNAMur/X00686_M_at Control
4 AFFX-b-ActinMur/M12481_3_at Control
5 AFFX-b-ActinMur/M12481_5_at Control
6 AFFX-b-ActinMur/M12481_M_at Control
7 AFFX-BioB-3_at Control
8 AFFX-BioB-5_at Control
9 AFFX-BioB-M_at Control
10 AFFX-BioC-3_at Control
11 AFFX-BioC-5_at Control
12 AFFX-BioDn-3_at Control
13 AFFX-BioDn-5_at Control
14 AFFX-CreX-3_at Control
15 AFFX-CreX-5_at Control
16 AFFX-DapX-3_at Control
17 AFFX-DapX-5_at Control
18 AFFX-DapX-M_at Control
19 AFFX-GapdhMur/M32599_3_at Control
20 AFFX-GapdhMur/M32599_5_at Control

Total number of rows: 19508

Table truncated, full table size 1616 Kbytes.

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL10369_Mm430A2_Mm_UG_10.cdf.gz 5.1 Mb (ftp)(http) CDF

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