GEO Accession viewer

Data table

Block

Row

Column

Name

oligo_id

SEQUENCE

gene_id

transcript_id

oligo_exon_or_transcript

oligo_type

gene_symbol

description

chromosome

homolog_human

homolog_rat

GO_biological_process

GO_molecular_function

GO_cell_location

GB_LIST

description_RefSeq

Riken_accessions

Accessions

CGH_type

CGH_xhyb

Affy_Probes

Ensembl_Unigene_xref

Ensembl_Refseq_xref

Ensembl_Family

Family_Members

SPOT_ID

M-ACTB

housekeeping gene,positive control

M-ACTB

M-GAPD

housekeeping gene,positive control

M-GAPD

M-LDHA

housekeeping gene,positive control

M-LDHA

M-RPL5

housekeeping gene,positive control

M-RPL5

HEX

spot and immobilization positive control

HEX

50%DMSO

hybridization negative control,spot solution

50%DMSO

Yeast intergenic sequence 1, spike RNA

Yeast intergenic sequence 2, spike RNA

Yeast intergenic sequence 3, spike RNA

Yeast intergenic sequence 4, spike RNA

Yeast intergenic sequence 5, spike RNA

Yeast intergenic sequence 6, spike RNA

Yeast intergenic sequence 7, spike RNA

Yeast intergenic sequence 8, spike RNA

Hint1

M200000158

GAAATCCCCGCCAAGATCATCTTCGAGGACGACCGGTGTCTTGCTTTTCATGACATTTCCCCTCAAGCA

ENSMUSG00000020267

ENSMUST00000020504

Hint1

histidine triad nucleotide binding protein 1 [Source:MarkerSymbol;Acc:MGI:1321133]

11:54709816-54713914

GO:0016787-hydrolase activity

GO:0005634-nucleus

NM_008248

Mus musculus histidine triad nucleotide binding protein 1 (Hint1), mRNA.

ri|2700055H04|ZX00082N21|577;ri|0710001J24|R000005O07|576

MMU60001, BC080296, BC070415, AL954817

U60001_at;1424018_at;1424018_at;1424018_at;99581_at;99581_at;1424017_a_at;1424017_a_at;1424017_a_at

Mm.433122

NM_008248.1

HISTIDINE TRIAD NUCLEOTIDE BINDING 1 ADENOSINE 5 MONOPHOSPHORAMIDASE KINASE C INHIBITOR 1 KINASE C INTERACTING 1 PKCI 1-40

ENSDARP00000058694;Q642J0;ENSDARG00000040128

Tcf1

M200000168

ACCTGTGGTTTTTATATAAGATGCCCCCTTAACATTCGGCACAGAGGAGGTGGCTCAGTGGCCCAATAT

ENSMUSG00000029556

ENSMUST00000031535

Tcf1

transcription factor 1 [Source:MarkerSymbol;Acc:MGI:98504]

5:115209360-115232037

GO:0001890-placenta development;GO:0006350-transcription;GO:0006355-regulation of transcription, DNA-dependent;GO:0030111-regulation of Wnt receptor signaling pathway;GO:0030326-embryonic limb morphogenesis;GO:0045449-regulation of transcription;GO:0045453-bone resorption;GO:0045893-positive regulation of transcription, DNA-dependent;GO:0045941-positive regulation of transcription;GO:0045944-positive regulation of transcription from RNA polymerase II promoter;GO:0048341-paraxial mesoderm formation

GO:0003677-DNA binding;GO:0003700-transcription factor activity;GO:0005515-protein binding;GO:0016563-transcriptional activator activity;GO:0042803-protein homodimerization activity;GO:0043565-sequence-specific DNA binding

GO:0001750-photoreceptor outer segment;GO:0005634-nucleus;GO:0005667-transcription factor complex

NM_009327

Mus musculus transcription factor 1 (Tcf1), mRNA.

MUSHNF1

Predicted_CGH_Oligo

1421234_at;1421234_at;1421234_at;M57966_s_at

Mm.332607

NM_009327.1

HEPATOCYTE NUCLEAR FACTOR 1 HNF-100

ENSDARP00000006784;ENSDARP00000011119;ENSDARP00000019875;ENSDARP00000038789;ENSDARP00000068655;Q6R2W4;Q8UVH4;Q8UW00;Q90X59;Q4L1M9;Q8UW01;Q6EES3;ENSDARG00000009470;ENSDARG00000022295;ENSDARG00000003873;ENSDARG00000006615

Smcp

M200000197

ACCACAGTCCCCACCAGGTGCTCAAGGCAACTGGAACCAGAAGAAGTCAAACAAATAGACTGTCCCTGA

ENSMUSG00000074435

ENSMUST00000098888

Smcp

sperm mitochondria-associated cysteine-rich protein [Source:MarkerSymbol;Acc:MGI:96945]

3:92669275-92674397

GO:0007338-single fertilization;GO:0007341-penetration of zona pellucida;GO:0030317-sperm motility

GO:0003674-molecular_function

GO:0005737-cytoplasm;GO:0005739-mitochondrion;GO:0005741-mitochondrial outer membrane

NM_008574

Mus musculus sperm mitochondria-associated cysteine-rich protein (Smcp), mRNA.

ri|4933417G15|PX00642O03|854

AC125089, MUSSELEX01, MUSMCS, BC061167, BC055104

100891_at;100891_at;1418358_at;1418358_at;1418358_at;m29603_s_at

Mm.331192

NM_008574.3

SMALL PROLINE RICH-93

Ptpra

M200000206

TCCTGGAACGTGTGAAAGCAGAAGGAATTTTAGATGTCTTCCAAACTGTCAAGAGCCTGCGGCTGCAGA

ENSMUSG00000027303

ENSMUST00000077303;ENSMUST00000028769

E;E

Ptpra

protein tyrosine phosphatase, receptor type, A [Source:MarkerSymbol;Acc:MGI:97808]

2:130141723-130245741

GO:0006468-protein amino acid phosphorylation;GO:0006470-protein amino acid dephosphorylation;GO:0007185-transmembrane receptor protein tyrosine phosphatase signaling pathway;GO:0008286-insulin receptor signaling pathway;GO:0016311-dephosphorylation

GO:0004721-phosphoprotein phosphatase activity;GO:0004725-protein tyrosine phosphatase activity;GO:0004872-receptor activity;GO:0016787-hydrolase activity;GO:0016791-phosphoric monoester hydrolase activity

GO:0005886-plasma membrane;GO:0016020-membrane;GO:0016021-integral to membrane

NM_008980

Mus musculus protein tyrosine phosphatase, receptor type, A (Ptpra), mRNA.

ri|6030490O05|PX00058M19|3502;ri|G430131C22|PH00002O19|2896

MUSLRPA, MUSLRP22, BC110683, BC050930, AY902328, AL731707, AJ431367, AF332082, AF332081

138497_at;138497_at;M36033_s_at;1447467_at;1447467_at;100908_at;100908_at;1425340_a_at;1425340_a_at;1425340_a_at;138497_at;138497_at;M36033_s_at;1447467_at;1447467_at;100908_at;100908_at;1425340_a_at;1425340_a_at;1425340_a_at

Mm.224246

NM_008980.1

TYROSINE PHOSPHATASE EC_3.1.3.48-91

ENSDARP00000002722;ENSDARP00000003403;ENSDARP00000005710;ENSDARP00000009124;ENSDARP00000014307;ENSDARP00000014954;ENSDARP00000015855;ENSDARP00000042166;ENSDARP00000043793;ENSDARP00000045118;ENSDARP00000046186;ENSDARP00000050550;ENSDARP00000051484;ENSDARP00000065585;ENSDARP00000067991;ENSDARP00000077063;ENSDARP00000077064;ENSDARP00000077065;ENSDARP00000077066;ENSDARP00000077067;ENSDARP00000077068;ENSDARP00000077069;ENSDARP00000077070;ENSDARP00000077071;ENSDARP00000077072;ENSDARP00000077739;ENSDARP00000077742;ENSDARP00000077743;ENSDARP00000077749;ENSDARP00000077753;ENSDARP00000077757;ENSDARP00000077759;ENSDARP00000077761;ENSDARP00000077766;ENSDARP00000077777;ENSDARP00000078854;ENSDARP00000078856;ENSDARP00000078858;ENSDARP00000078862;ENSDARP00000078863;ENSDARP00000078872;ENSDARP00000083100;ENSDARP00000083102;ENSDARP00000083518;ENSDARP00000083525;ENSDARP00000083529;ENSDARP00000083533;ENSDARP00000083536;ENSDARP00000083537;ENSDARP00000083538;ENSDARP00000083544;ENSDARP00000083549;ENSDARP00000083565;ENSDARP00000083641;ENSDARP00000083645;ENSDARP00000083649;ENSDARP00000083839;ENSDARP00000084769;ENSDARP00000084774;ENSDARP00000084775;ENSDARP00000084777;ENSDARP00000084781;ENSDARP00000084793;ENSDARP00000086962;ENSDARP00000086966;ENSDARP00000086972;ENSDARP00000086982;ENSDARP00000086984;ENSDARP00000086995;ENSDARP00000086999;ENSDARP00000087017;ENSDARP00000087019;ENSDARP00000087031;Q1LX96;Q1MTF9;Q6DC74;Q90YJ4;Q9DES7;ENSDARP00000073922;Q90YJ5;ENSDARP00000073928;ENSDARG00000021151;ENSDARG00000020871;ENSDARG00000013244;ENSDARG00000019945;ENSDARG00000062043;ENSDARG00000062033;ENSDARG00000038590;ENSDARG00000030937;ENSDARG00000056919;ENSDARG00000015891;ENSDARG00000062484;ENSDARG00000059738;ENSDARG00000005754;ENSDARG00000044635;ENSDARG00000060151;ENSDARG00000060123;ENSDARG00000001769;ENSDARG00000059452;ENSDARG00000063389;ENSDARG00000033042;ENSDARG00000061842;ENSDARG00000051814;ENSDARG00000045006

Rom1

M200000239

TTACAATTCGTTACTCAGACTCAGGGAAGGAAAGGTCCCTGGGGTTATAGGAGTTAAGAGCAAGCGGAG

ENSMUSG00000071648

ENSMUST00000096242

Rom1

rod outer segment membrane protein 1 [Source:MarkerSymbol;Acc:MGI:97998]

19:8994443-8996401

GO:0007155-cell adhesion;GO:0007601-visual perception;GO:0050896-response to stimulus

GO:0005515-protein binding

GO:0005615-extracellular space;GO:0016020-membrane;GO:0016021-integral to membrane

NM_009073

Mus musculus rod outer segment membrane protein 1 (Rom1), mRNA.

ri|5033427A21|PX00715F20|1511

AC130819, MUSROM1X, BC014827, AC073153

M96760_s_at;1448996_at;1448996_at;1448996_at;161525_f_at;93453_at;93453_at

Mm.426094

NM_009073.2

PERIPHERIN RETINAL DEGENERATION SLOW-53

ENSDARP00000002686;ENSDARP00000003339;ENSDARP00000011326;ENSDARP00000017853;ENSDARP00000036202;ENSDARP00000055414;Q7ZWC5;Q9IAB7;Q9IAB8;Q5RIH4;Q6NYK2;ENSDARP00000041770;Q6PBN3;Q66HW7;ENSDARG00000013134;ENSDARG00000026926;ENSDARG00000014840;ENSDARG00000031484;ENSDARG00000038018;ENSDARG00000021345;ENSDARG00000019752

S100a3

M200000250

ACACCCTTCCCACTCTCTCTGTGGTACCCCTTTCAATCTAGACTTGCCAAGTTCTTGATGTGCTAACCC

ENSMUSG00000001021

ENSMUST00000079456;ENSMUST00000001047

E;E

S100a3

S100 calcium binding protein A3 [Source:MarkerSymbol;Acc:MGI:1338849]

3:90672879-90688629

GO:0006118-electron transport

GO:0005509-calcium ion binding;GO:0008270-zinc ion binding;GO:0009055-electron carrier activity;GO:0020037-heme binding;GO:0046872-metal ion binding

NM_011310

Mus musculus S100 calcium binding protein A3 (S100a3), mRNA.

ri|5430416K16|PX00714E16|716;ri|4732433D11|PX00732A11|2459

BC100697, BC100696, BC100690, BC099893, AF004941, AC160552, AF087470

101052_g_at;101052_g_at;Msa.7755.0_s_at;1421856_at;1421856_at;1421856_at;101051_at;101051_at;aa530179_s_at;101052_g_at;101052_g_at;Msa.7755.0_s_at;1421856_at;1421856_at;1421856_at;101051_at;101051_at;aa530179_s_at

NM_011310.2

S100 S100 CALCIUM BINDING-95

ENSDARP00000008351;ENSDARP00000020595;ENSDARP00000033294;ENSDARP00000053396;ENSDARP00000054468;ENSDARP00000056560;ENSDARP00000072346;ENSDARP00000072444;ENSDARP00000074756;ENSDARP00000086669;Q68EI4;Q5BLG7;Q6XG62;Q7ZVA4;Q6DGT8;Q5XJJ5;Q503K9;ENSDARG00000057598;ENSDARG00000038729;ENSDARG00000063235;ENSDARG00000036773;ENSDARG00000037425;ENSDARG00000015543;ENSDARG00000055589;ENSDARG00000025254;ENSDARG00000009978;ENSDARG00000055514